Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060299.seq
         (556 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    25   0.44 
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    24   1.0  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    23   1.8  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           22   3.1  
AJ850291-1|CAH64511.1|  533|Tribolium castaneum putative esteras...    21   5.5  
AJ850289-1|CAH64509.1|  533|Tribolium castaneum putative esteras...    21   5.5  
AJ850287-1|CAH64507.1|  509|Tribolium castaneum putative esteras...    21   5.5  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   5.5  
AJ850290-1|CAH64510.1|  533|Tribolium castaneum putative esteras...    21   7.2  
AJ850288-1|CAH64508.1|  510|Tribolium castaneum putative esteras...    21   7.2  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   9.5  

>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 25.0 bits (52), Expect = 0.44
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 262 CWREGHGAVSLPVQLE 215
           CW E  G+ SLP+ LE
Sbjct: 40  CWSEDMGSFSLPLDLE 55


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 25  CFCKTRSGRHSEPR*DIVS*DLPI 96
           C+C  + GR ++P  D +   LP+
Sbjct: 425 CYCPIKFGRKADPNGDYIRKYLPV 448


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = -2

Query: 210 ALEDLLSPLAWIPPPVSRVQYRSCMVRMYQRF 115
           AL     PL   PPP       S M+  YQR+
Sbjct: 195 ALGAFYQPLQPFPPPYPFYPGTSAMLAAYQRY 226


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -3

Query: 167 QSPGSSTGPAWCGCTSASWP 108
           Q PGSST  A  G   AS P
Sbjct: 101 QEPGSSTTSATSGAVMASPP 120


>AJ850291-1|CAH64511.1|  533|Tribolium castaneum putative esterase
           protein.
          Length = 533

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 7/32 (21%), Positives = 16/32 (50%)
 Frame = -2

Query: 270 LAVVGGKATEPSPCQSSSNRALEDLLSPLAWI 175
           + ++G  + E    +   N  L+D++  L W+
Sbjct: 141 IGIIGFLSLEDPDLEVPGNAGLKDMVMALKWV 172


>AJ850289-1|CAH64509.1|  533|Tribolium castaneum putative esterase
           protein.
          Length = 533

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 7/32 (21%), Positives = 16/32 (50%)
 Frame = -2

Query: 270 LAVVGGKATEPSPCQSSSNRALEDLLSPLAWI 175
           + ++G  + E    +   N  L+D++  L W+
Sbjct: 141 IGIIGFLSLEDPDLEVPGNAGLKDMVMALKWV 172


>AJ850287-1|CAH64507.1|  509|Tribolium castaneum putative esterase
           protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 7/32 (21%), Positives = 16/32 (50%)
 Frame = -2

Query: 270 LAVVGGKATEPSPCQSSSNRALEDLLSPLAWI 175
           + ++G  + E    +   N  L+D++  L W+
Sbjct: 140 IGIIGFLSLEDPDLEVPGNAGLKDMVMALKWV 171


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 376 KCEQGFVGPK 405
           KC  GFVGP+
Sbjct: 285 KCPPGFVGPR 294


>AJ850290-1|CAH64510.1|  533|Tribolium castaneum putative esterase
           protein.
          Length = 533

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/32 (21%), Positives = 16/32 (50%)
 Frame = -2

Query: 270 LAVVGGKATEPSPCQSSSNRALEDLLSPLAWI 175
           + ++G  + E    +   N  L+D++  L W+
Sbjct: 141 IGIIGFLSLEDPDLEVPGNAGLKDMVLALKWV 172


>AJ850288-1|CAH64508.1|  510|Tribolium castaneum putative esterase
           protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/32 (21%), Positives = 16/32 (50%)
 Frame = -2

Query: 270 LAVVGGKATEPSPCQSSSNRALEDLLSPLAWI 175
           + ++G  + E    +   N  L+D++  L W+
Sbjct: 141 IGIIGFLSLEDPDLEVPGNAGLKDMVLDLKWV 172


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 225 SSSNRALEDLLSPLAWIPPPVSRVQ 151
           SS  +     LSP++ +PP  +R Q
Sbjct: 469 SSKRQRTSPQLSPMSSLPPYPNRTQ 493


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,335
Number of Sequences: 336
Number of extensions: 2373
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13725787
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)