Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060299.seq
         (556 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    29   0.46 
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    27   1.4  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    27   1.9  
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    25   7.5  
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce...    25   7.5  
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy...    25   9.9  
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c...    25   9.9  

>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 29.1 bits (62), Expect = 0.46
 Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 7/60 (11%)
 Frame = +2

Query: 5   TALNDKYVS-VKQGV-DVTANQDEISS-----HETFQLEFDWATKRWYIRTMQDRYWTLE 163
           T+L+ K++S VK  V ++ A+ + + S      E+  L+F W T+R++     +R W++E
Sbjct: 216 TSLDSKFLSNVKTKVFNMKASTEILESLFTSIEESLSLKFGWRTRRFFRSMFYERSWSVE 275


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +2

Query: 146 RYWT-LETGGGIQASGDNKSSNALFELDWQGD 238
           +YW       G+   GD KSS++L   DWQ D
Sbjct: 469 KYWPDFCKAAGVFCMGDLKSSDSLKVCDWQND 500


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +2

Query: 2   GTALNDKYV-SVKQGVDVTANQDEISSHETFQLEFDWATKRWYIRTMQDRYWTLE 163
           G A    YV  + +GV +      +S +E   + FDW   RW +    D  +TL+
Sbjct: 636 GLARFSSYVYHISKGVPLLVRNVLLSIYENKIIYFDWKKNRWEVN--YDEMYTLD 688


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = +2

Query: 11  LNDKYVSVKQGVDVTANQDE--ISSHETFQLEFDWATKRWYIRTMQDRYWTLETGGGIQA 184
           ++D Y+  K   ++  N  E  IS +ET  +  + A  R+Y   ++ + W+      I  
Sbjct: 68  MSDPYMQAKLYKELADNFPEAIISRYETQGVARNSACDRYYQEALRKKSWSRSLSNNISL 127

Query: 185 SGDNKS 202
           S  + S
Sbjct: 128 SQSSSS 133


>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -2

Query: 240 PSPCQSSSNRALEDLLSPLAWIPPPVSRVQYRSCMVRM 127
           P+P  ++S     D LSP +   PP S +++   + ++
Sbjct: 162 PTPSVANSQEYTLDKLSPPSTAKPPASVIEFNPSLAKL 199


>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 581

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +3

Query: 48  TSQRTKMRYRLMRPSNW--SLTGPRSAGTSAPCRTGT 152
           TS  T +  +  + S W  +LT PRS     PC+ GT
Sbjct: 129 TSLSTGLLSKREKWSLWEGNLTNPRSEQPHTPCKKGT 165


>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 801

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 450 LDGLVVGLVALQLHALGAHEPLFALQ 373
           L+G ++G ++ +LH   A E +F LQ
Sbjct: 240 LEGELMGTISAELHLFDAVEEVFILQ 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,045,588
Number of Sequences: 5004
Number of extensions: 37501
Number of successful extensions: 113
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)