Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060299.seq
(556 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0098 + 25560158-25560925 32 0.27
11_06_0688 + 26291590-26292027,26292301-26292378,26292850-26292936 31 0.62
08_02_1043 + 23906340-23906412,23906525-23906631,23906727-239068... 30 1.1
07_03_1615 - 28157237-28157472,28157649-28157728,28157853-281580... 30 1.1
06_01_0397 + 2855273-2855347,2855515-2855606,2856317-2856347,285... 30 1.4
03_05_0593 - 25959013-25959789 30 1.4
06_03_0978 - 26494069-26495223 29 1.9
06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315 29 1.9
05_01_0327 - 2565574-2565654,2566037-2566099,2566511-2566591,256... 29 1.9
08_02_0939 - 22820618-22821478 28 5.8
08_02_0938 + 22814748-22815608 28 5.8
03_02_0229 + 6594931-6595030,6595573-6595826,6595935-6596061,659... 28 5.8
11_01_0500 + 3866752-3866799,3866854-3866898,3867398-3867679 27 7.6
03_01_0648 - 4749150-4749275,4749902-4749986,4750761-4750861,475... 27 7.6
02_03_0246 - 16807619-16808145,16808208-16808868 27 7.6
01_06_1256 - 35775149-35775590,35775782-35775840 27 7.6
>05_06_0098 + 25560158-25560925
Length = 255
Score = 32.3 bits (70), Expect = 0.27
Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = -1
Query: 553 PCAASESHVTASPS-AASTCRSDP*SRRLPWARAPPGWSRSWPCCTPASRPWGPRTLVRT 377
P + S S ++SPS AA+ S P S R P PP S S P P+ R PRT+ T
Sbjct: 5 PNSPSSSTSSSSPSSAAAAASSSPSSHRPP---PPPPSSSSQPALPPSPRTVVPRTIDTT 61
>11_06_0688 + 26291590-26292027,26292301-26292378,26292850-26292936
Length = 200
Score = 31.1 bits (67), Expect = 0.62
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Frame = -1
Query: 253 EGHGAVSLPVQLEQSVRRLVVSAGLDTAASLQ---GPVPVLHGADV---PALRGPVKLQL 92
+ +G + + + Q+VRR + L A L+ + LHGA + P R PV+
Sbjct: 17 DAYGLIKMIAEAAQTVRRNRATC-LQLARRLKMIGDLLKQLHGAQLMQQPETRNPVEQLE 75
Query: 91 EGLMRRYLILVRCDVHSLFYR 29
E L R YL++ C S YR
Sbjct: 76 ETLRRAYLLVRSCQGRSYVYR 96
>08_02_1043 +
23906340-23906412,23906525-23906631,23906727-23906846,
23907174-23907353,23907508-23907666,23907751-23907920,
23907971-23908165,23908536-23908888,23909047-23909223,
23910402-23910466
Length = 532
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +2
Query: 20 KYVSVKQGV--DVTANQDEISSHETFQLEFDWATKRWYIRTMQDRYWTLETGGGIQASGD 193
KY+S G ++T +QD S+ ETF+L + + + + R ++ ++ T G I A+ D
Sbjct: 74 KYLSANGGGGGNLTVDQDVASTWETFRL-WRVSYREYQFRCIKGQFLTASNGDVISATAD 132
Query: 194 NKSSNALFELD 226
+ F ++
Sbjct: 133 SPGDTESFYIE 143
>07_03_1615 -
28157237-28157472,28157649-28157728,28157853-28158009,
28158379-28158565,28158646-28158772,28159218-28159805,
28159898-28160443,28161579-28161620,28162081-28162145,
28162273-28162377,28162682-28162741,28163149-28163237,
28163611-28163732,28163862-28163968,28164041-28164111,
28164377-28164470,28165010-28165247,28166112-28166347
Length = 1049
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +3
Query: 450 GGARAQGSRLLQGSERQVLAADGE-AVTCDSDA 545
GG A+G +L++ + R++ A DG TC S+A
Sbjct: 476 GGGDARGDKLMENARRRIAAGDGRPGTTCWSEA 508
>06_01_0397 +
2855273-2855347,2855515-2855606,2856317-2856347,
2856687-2856830,2856935-2857162,2857374-2857487,
2857749-2858249
Length = 394
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1
Query: 448 GWSRSWPCCTPASRPWGPRTLVRTSAL 368
GW SW A+RPW PR+LV L
Sbjct: 248 GWGWSWMDRWIAARPWEPRSLVHPENL 274
>03_05_0593 - 25959013-25959789
Length = 258
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 435 LRDHPGGARAQGSRLLQGSERQVLAADGEAV 527
LR+H GG +A G +++ GS+ ++ G AV
Sbjct: 102 LREHHGGGKAGGGKVVFGSQLRIQVPTGRAV 132
>06_03_0978 - 26494069-26495223
Length = 384
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -1
Query: 205 RRLVVSAGLDTAASLQGPVPVLHGAD 128
R VV AGLD A P P +HG D
Sbjct: 331 RIYVVGAGLDVAIGTVSPSPAIHGGD 356
>06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315
Length = 678
Score = 29.5 bits (63), Expect = 1.9
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = -1
Query: 544 ASESHVTASPSAASTCRSDP*SRRLPWARAPPGWSRSWPCCTPASRPWGPRTLVRTSA 371
++ S +++SPS A + S SR A P S SW C + A+ P T RTS+
Sbjct: 615 SATSSLSSSPSPAPSPDSATASRSASPTSARPATS-SWTCTSAATASASPATAKRTSS 671
>05_01_0327 -
2565574-2565654,2566037-2566099,2566511-2566591,
2566710-2566787,2566892-2566984,2567108-2567225,
2567568-2567695,2567808-2568083,2568763-2568917,
2568997-2569140,2569427-2569844
Length = 544
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +3
Query: 372 AEVRTRVRGPQGREAGVQQGQLRDHPGG-ARAQGSRLLQGSERQ 500
A V TR R +GR AG + +R GG A + GS+ +ER+
Sbjct: 2 APVETRSRAGRGRPAGSRSSPVRRRDGGVAASPGSQSAASTERR 45
>08_02_0939 - 22820618-22821478
Length = 286
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 161 ETGGGIQASGDNKSSNALFELDWQGDGSV 247
E I+ASGD+K ++ LDW+ G V
Sbjct: 252 EKDRAIRASGDDKGNSQCVGLDWRDHGQV 280
>08_02_0938 + 22814748-22815608
Length = 286
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 161 ETGGGIQASGDNKSSNALFELDWQGDGSV 247
E I+ASGD+K ++ LDW+ G V
Sbjct: 252 EKDRAIRASGDDKGNSQCVGLDWRDHGQV 280
>03_02_0229 +
6594931-6595030,6595573-6595826,6595935-6596061,
6596197-6596470,6596616-6596748,6596898-6596984,
6597067-6597186
Length = 364
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +2
Query: 392 SWAPRA*SWSATRPTTRPSRWCAGPREP 475
++APRA S S +R T +++ AGPR+P
Sbjct: 11 TYAPRAASRSRSRRPTPATQYNAGPRKP 38
>11_01_0500 + 3866752-3866799,3866854-3866898,3867398-3867679
Length = 124
Score = 27.5 bits (58), Expect = 7.6
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 375 EVRTRVRGPQGREAGVQQGQLRDHPGGAR-AQGSRLLQGSERQVLAA 512
E T +GR G +G+ + HP GAR G+R G+ ++V A
Sbjct: 67 EGSTTAASAKGRSGGRVKGERQSHPAGAREGDGNRF--GASKRVARA 111
>03_01_0648 -
4749150-4749275,4749902-4749986,4750761-4750861,
4750933-4751191,4751382-4751434,4752828-4752990,
4753181-4754616
Length = 740
Score = 27.5 bits (58), Expect = 7.6
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +1
Query: 115 EALVHPHHAGPVLDPG 162
+ LVHP HA PVL PG
Sbjct: 267 QGLVHPDHARPVLLPG 282
>02_03_0246 - 16807619-16808145,16808208-16808868
Length = 395
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -1
Query: 553 PCAASESHVTASPSAASTCRSDP*SRRLPWARAPPG 446
PC ASPSA S C + P + R P + PG
Sbjct: 117 PCCCGRRRRAASPSA-SPCTTPPATARAPRTSSTPG 151
>01_06_1256 - 35775149-35775590,35775782-35775840
Length = 166
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +3
Query: 402 QGREAGVQQG--QLRDHPGGARAQGSRLLQGSERQVLA 509
QG EA ++G Q D G + +G+R QGS+ Q ++
Sbjct: 91 QGEEASAEEGAAQAADRQGPGQPRGARKEQGSQLQEMS 128
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,137,714
Number of Sequences: 37544
Number of extensions: 319286
Number of successful extensions: 1563
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1563
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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