Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060299.seq
(556 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42796| Best HMM Match : Fascin (HMM E-Value=5.4e-32) 55 3e-08
SB_54879| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 3e-08
SB_28073| Best HMM Match : NMT (HMM E-Value=0) 31 0.84
SB_52674| Best HMM Match : Peptidase_A17 (HMM E-Value=3.9e-07) 30 1.5
SB_37484| Best HMM Match : DUF746 (HMM E-Value=4.1) 29 2.6
SB_42832| Best HMM Match : ShTK (HMM E-Value=4.6e-07) 29 2.6
SB_14035| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_7392| Best HMM Match : Ricin_B_lectin (HMM E-Value=4.6e-32) 28 4.5
SB_1724| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_50539| Best HMM Match : IL17 (HMM E-Value=4.1) 27 7.8
SB_29794| Best HMM Match : DRAT (HMM E-Value=5.7) 27 7.8
SB_14036| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
>SB_42796| Best HMM Match : Fascin (HMM E-Value=5.4e-32)
Length = 243
Score = 55.2 bits (127), Expect = 3e-08
Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Frame = +1
Query: 259 NNGKYLLTKRSGHLYANADSIDDNCKYYFYLINRPILVLKCEQGFVGPKGV--KLECNKA 432
+ G YL + + G L +++ K+ ++NRP+L+LK E GF+G K +LECN+A
Sbjct: 89 HTGMYLTSNKQGQLLDGTPELEEAGKFSMEIVNRPLLILKGEFGFIGCKTSTNRLECNRA 148
Query: 433 NYE--TIQVVRG----PKGAVYFKG-QSGKYW 507
Y+ T++V +G Y G + GKYW
Sbjct: 149 AYDVFTLEVEEAESEEERGTWYKIGSEKGKYW 180
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Frame = +2
Query: 74 SSHETFQLEFDWATKR-----WY-IRTMQDRYWTLETGGGIQASGDNKSSNALFEL 223
++++ F LE + A WY I + + +YW +E G I SG+ S++ LFE+
Sbjct: 148 AAYDVFTLEVEEAESEEERGTWYKIGSEKGKYWRVEGDGSISVSGEANSAD-LFEI 202
Score = 29.5 bits (63), Expect = 1.9
Identities = 20/69 (28%), Positives = 31/69 (44%)
Frame = +2
Query: 47 DVTANQDEISSHETFQLEFDWATKRWYIRTMQDRYWTLETGGGIQASGDNKSSNALFELD 226
D+ ANQ ++ E FQLEF K + YW G + A+ + A F ++
Sbjct: 21 DLRANQMDMGDTEIFQLEFSEDGKTVSLLGNNGMYWV--ANGPVSATEKTITPKAQFTME 78
Query: 227 WQGDGSVAF 253
+ + VAF
Sbjct: 79 YH-NNQVAF 86
>SB_54879| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 225
Score = 55.2 bits (127), Expect = 3e-08
Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Frame = +1
Query: 259 NNGKYLLTKRSGHLYANADSIDDNCKYYFYLINRPILVLKCEQGFVGPKGV--KLECNKA 432
+ G YL + + G L +++ K+ ++NRP+L+LK E GF+G K +LECN+A
Sbjct: 71 HTGMYLTSNKQGQLLDGTPELEEAGKFSMEIVNRPLLILKGEFGFIGCKTSTNRLECNRA 130
Query: 433 NYE--TIQVVRG----PKGAVYFKG-QSGKYW 507
Y+ T++V +G Y G + GKYW
Sbjct: 131 AYDVFTLEVEEAESEEERGTWYKIGSEKGKYW 162
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Frame = +2
Query: 74 SSHETFQLEFDWATKR-----WY-IRTMQDRYWTLETGGGIQASGDNKSSNALFEL 223
++++ F LE + A WY I + + +YW +E G I SG+ S++ LFE+
Sbjct: 130 AAYDVFTLEVEEAESEEERGTWYKIGSEKGKYWRVEGDGSISVSGEANSAD-LFEI 184
Score = 29.5 bits (63), Expect = 1.9
Identities = 20/69 (28%), Positives = 31/69 (44%)
Frame = +2
Query: 47 DVTANQDEISSHETFQLEFDWATKRWYIRTMQDRYWTLETGGGIQASGDNKSSNALFELD 226
D+ ANQ ++ E FQLEF K + YW G + A+ + A F ++
Sbjct: 3 DLRANQMDMGDTEIFQLEFSEDGKTVSLLGNNGMYWV--ANGPVSATEKTITPKAQFTME 60
Query: 227 WQGDGSVAF 253
+ + VAF
Sbjct: 61 YH-NNQVAF 68
>SB_28073| Best HMM Match : NMT (HMM E-Value=0)
Length = 280
Score = 30.7 bits (66), Expect = 0.84
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -1
Query: 496 RSDP*SRRLPWARAPPGWSRSWPC 425
R D S L WA PPGW W C
Sbjct: 196 RFDYSSEFLQWALKPPGWKMDWHC 219
>SB_52674| Best HMM Match : Peptidase_A17 (HMM E-Value=3.9e-07)
Length = 729
Score = 29.9 bits (64), Expect = 1.5
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 146 GPAWCGCTSASWPSQT 99
GP W ++ASWPSQT
Sbjct: 455 GPKWLSASAASWPSQT 470
>SB_37484| Best HMM Match : DUF746 (HMM E-Value=4.1)
Length = 465
Score = 29.1 bits (62), Expect = 2.6
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3
Query: 146 GPAWCGCTSASWPSQT 99
GP W + ASWPSQT
Sbjct: 338 GPKWLSASPASWPSQT 353
>SB_42832| Best HMM Match : ShTK (HMM E-Value=4.6e-07)
Length = 500
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +3
Query: 48 TSQRTKMRYRLMRPSNWSLTGPRSAGTSAPCRTGTGPW 161
T + +++++ R WSL + A C T TG W
Sbjct: 388 TDRTHRLQWKPWRVREWSLAWAKRAALGGTCDTATGKW 425
>SB_14035| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 388
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 376 KCEQGFVGPKGVKLECNKANYETIQVVRGPKGAVYFKGQSG 498
K + G GPKG K + + +Q +RG G KG++G
Sbjct: 253 KGDTGITGPKGPKGDTGNKGDQGVQGLRGYNGTQGAKGEAG 293
>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1853
Score = 28.7 bits (61), Expect = 3.4
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +1
Query: 376 KCEQGFVGPKGVKLECNKANYETIQVVRGPKGAVYFKGQSGKYWP 510
K E+G +GPKG+K E + + I RG KG F G +G P
Sbjct: 1453 KGERGLIGPKGIKGE--RGYGKGIPGPRGEKGDSGFPGINGPPGP 1495
>SB_7392| Best HMM Match : Ricin_B_lectin (HMM E-Value=4.6e-32)
Length = 594
Score = 28.3 bits (60), Expect = 4.5
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +1
Query: 331 CKYYFYLINR-PILVLKCEQGFVGPK-GVKLECNKANYETIQVVRGPK 468
C Y Y ++R P+L C Q G G KLE + + +Q++R PK
Sbjct: 187 CGYTDYHVSREPLLKPHCHQFTSGGHLGSKLESYISQFTKVQLIRAPK 234
>SB_1724| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 899
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -3
Query: 110 PSQTPIGRSHETISHLGSL*RPLLVLQKHICR*EP 6
PS TP G H+TIS+ P ++++ +C P
Sbjct: 566 PSHTPTGAYHQTISYANRCVLPDHLIREQVCTTRP 600
>SB_50539| Best HMM Match : IL17 (HMM E-Value=4.1)
Length = 456
Score = 27.5 bits (58), Expect = 7.8
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -2
Query: 237 SPCQSSSNRALEDLLSPLAWIPPPV 163
SPC S+ D+L P W+P P+
Sbjct: 271 SPCPPSNPSCKSDILLPGKWVPTPL 295
>SB_29794| Best HMM Match : DRAT (HMM E-Value=5.7)
Length = 368
Score = 27.5 bits (58), Expect = 7.8
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 438 RDHPGGARAQGSRLLQ 485
+DHPG RA G+RLL+
Sbjct: 188 KDHPGTTRADGNRLLE 203
>SB_14036| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 658
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 376 KCEQGFVGPKGVKLECNKANYETIQVVRGPKGAVYFKGQSG 498
K + G GP+G K + + +Q +RG G KG++G
Sbjct: 452 KGDTGITGPQGPKGDTGNKGDQGVQGLRGYNGTQGAKGEAG 492
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,592,297
Number of Sequences: 59808
Number of extensions: 338643
Number of successful extensions: 1568
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1567
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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