Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060299.seq
         (556 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     25   0.39 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   1.6  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   2.7  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   2.7  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 25.4 bits (53), Expect = 0.39
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 25  CFCKTRSGRHSEPR*DIVS*DLPI 96
           C+C  R GR ++P  D +   LP+
Sbjct: 429 CYCPVRFGRKADPNGDYIRRYLPV 452


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 16/49 (32%), Positives = 20/49 (40%)
 Frame = -1

Query: 550 CAASESHVTASPSAASTCRSDP*SRRLPWARAPPGWSRSWPCCTPASRP 404
           C A  +H  +S    + CR DP   R   A   P   +  PC  P S P
Sbjct: 279 CEACPAHSKSSDYGFTECRCDPGYFR---AEKDP---KKMPCTQPPSAP 321


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +3

Query: 78  LMRPSNWSLTGPRSAGT-SAPCRT 146
           L+ P N+S +GP S G+ +A C +
Sbjct: 57  LINPGNFSPSGPNSPGSFTAGCHS 80


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +3

Query: 78  LMRPSNWSLTGPRSAGT-SAPCRT 146
           L+ P N+S +GP S G+ +A C +
Sbjct: 57  LINPGNFSPSGPNSPGSFTAGCHS 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,502
Number of Sequences: 438
Number of extensions: 2939
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)