Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060298.seq
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.03 |ker1||DNA-directed RNA polymerase I complex subunit...    28   1.0  
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa...    27   1.8  
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc...    27   1.8  
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch...    27   3.1  
SPAC17C9.08 |pnu1|nuc1, end1|endodeoxyribonuclease Pnu1|Schizosa...    26   4.1  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    26   4.1  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    25   7.2  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    25   7.2  
SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit Snu23|...    25   9.5  

>SPBC1718.03 |ker1||DNA-directed RNA polymerase I complex subunit
           subunit Ker1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +2

Query: 77  QNDDKHAARNDFRRFEEENASKRKRXMENIRTSARSTTNG 196
           +NDD H  +   +R ++E     +R  E  R +   TT G
Sbjct: 101 ENDDLHLDKETKKRLKKEKKKAARREKEEARKAKADTTQG 140


>SPBC1685.08 |||histone deacetylase complex subunit
           Cti6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 424

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 19/79 (24%), Positives = 35/79 (44%)
 Frame = +2

Query: 80  NDDKHAARNDFRRFEEENASKRKRXMENIRTSARSTTNGCKWKLCEEKKLSPKWLP*TAY 259
           +++KH+ + +    E    S ++  + +I T+ RST    +    E+K   P  +     
Sbjct: 256 DEEKHSVKEESG--EASPQSSQQSTITSISTTTRSTRKAKREAAAEDKADLPAAVAPKPS 313

Query: 260 PTAGGGPREVRGASRDRHR 316
            T   G R  + +S D HR
Sbjct: 314 KTRKVGGRRGKSSSNDNHR 332


>SPBC16A3.08c |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +3

Query: 321 LSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAXSSPRSRTRNTK 473
           LSE   AA    R  + LEN T +E      L A L ++ S  +S  + +K
Sbjct: 181 LSERKSAAKPVGRTVEKLENATKVEKSAPEELFASLKKSASQKKSAAKESK 231


>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 703

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 503 LHKNKACAPPLRISCPTP 450
           +++NK C PPL++ C  P
Sbjct: 19  VNENKLCFPPLKVVCQAP 36


>SPAC17C9.08 |pnu1|nuc1, end1|endodeoxyribonuclease
           Pnu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 135 RQNERGXWKI*GRVRGVPQTVA 200
           ++NERG W++  RV G P  VA
Sbjct: 206 KKNERGQWEVQYRVIGNPPNVA 227


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 130  KCVKTKEXXGKYKDECEEYHKRLQVEIMRREEAESEV 240
            K  + +E     KD+C  Y  +L   + +  E ESE+
Sbjct: 1026 KVQELREENASLKDQCRTYESQLASLVSKYSETESEL 1062


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -3

Query: 456 DSSAMXSPVTVEPPRWQRDHPPCWCGSPAPCVFARIHRRPG 334
           D+    SP +  PP + + HPP    + AP +  R+   PG
Sbjct: 140 DTVISDSPTSPHPPSFVQPHPPYGIFA-APILDVRVLTNPG 179


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 74  NQNDDKHAARNDFRRFEEENASKRKRXME 160
           N  DD     ++F++FEEE  + RK  ++
Sbjct: 735 NGTDDTIVKSHNFQKFEEEFGNSRKEWLQ 763


>SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit
           Snu23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 151

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = +1

Query: 100 KERF*TF*RRKCVKTKEXXGKY--KDECEEYHKRLQVEIMRREE 225
           KER   + RR+ ++ ++   +Y  K+  E YH+ L+ + +RR++
Sbjct: 76  KERM-EYWRRQLLEPEKGSEEYSLKERVERYHQELEAKKLRRKQ 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,090,708
Number of Sequences: 5004
Number of extensions: 36144
Number of successful extensions: 150
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)