Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060298.seq
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0788 + 25223373-25223405,25224285-25224373,25224496-252246... 32 0.46
05_07_0260 - 28739035-28739085,28739316-28739596,28740545-287405... 31 1.1
10_08_0113 - 14896341-14897153 30 1.4
05_05_0236 - 23517512-23517682,23519436-23519516,23519685-235198... 29 2.4
02_04_0554 - 23831212-23832163,23833173-23833438,23833694-238337... 29 3.2
01_04_0051 + 15430980-15431591 29 3.2
06_01_0893 - 6834350-6834464,6835042-6835218,6835301-6835350,683... 29 4.2
09_02_0015 - 2980811-2980924,2981231-2981266,2981447-2981519,298... 28 5.6
04_03_0659 - 18453778-18453903,18453976-18454963,18455496-184562... 28 5.6
12_01_0524 - 4167867-4168445 28 7.4
06_03_0827 - 25122413-25122430,25122970-25123063,25124210-25124535 28 7.4
04_04_1668 + 35217254-35218531 28 7.4
01_05_0024 - 17262504-17263308,17264251-17264399,17264879-172649... 28 7.4
11_04_0221 + 15021145-15022497 27 9.8
05_01_0521 + 4500268-4500283,4500364-4500680,4500999-4501094,450... 27 9.8
04_03_0978 - 21385894-21386097,21386330-21386791,21387580-21387786 27 9.8
03_01_0320 - 2510907-2512190 27 9.8
01_06_1117 - 34633311-34634030,34634434-34634873,34635320-346353... 27 9.8
01_03_0202 - 13762042-13762572 27 9.8
>01_05_0788 +
25223373-25223405,25224285-25224373,25224496-25224624,
25224710-25224766,25224844-25224916,25225509-25225667,
25226755-25226904,25227013-25227268,25227358-25227479,
25227531-25227599,25227653-25227739,25227842-25227930,
25228168-25228224,25229162-25229258,25229348-25229506
Length = 541
Score = 31.9 bits (69), Expect = 0.46
Identities = 20/60 (33%), Positives = 33/60 (55%)
Frame = +3
Query: 372 LENRTNMEDDRVAILEAQLSQAXSSPRSRTRNTKRWRASFVLMEQD*RGRRNAPNKAIAK 551
LEN T EDD+ +LE LS++ S+ + R +TK F+ M++ A +A+A+
Sbjct: 47 LENGTVKEDDKTVLLEGGLSKSPST-KFRINSTKANLIRFITMDESFLLENRAVLRAMAE 105
>05_07_0260 -
28739035-28739085,28739316-28739596,28740545-28740572,
28740653-28740749,28741216-28741272,28741353-28741415,
28741533-28741621,28741779-28741865,28742041-28742162,
28742245-28742500,28742595-28742744,28743120-28743278,
28743820-28743892,28743968-28744024,28744115-28744243,
28744469-28744560,28745220-28745252
Length = 607
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/60 (31%), Positives = 32/60 (53%)
Frame = +3
Query: 372 LENRTNMEDDRVAILEAQLSQAXSSPRSRTRNTKRWRASFVLMEQD*RGRRNAPNKAIAK 551
LEN T EDD+ +LE S++ S+ + R +TK F+ M++ A +A+A+
Sbjct: 48 LENETMKEDDKAVLLEGGQSKSPST-KLRNMSTKANLIRFITMDESFLLENRAVLRAMAE 106
>10_08_0113 - 14896341-14897153
Length = 270
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = -1
Query: 605 PEIXGCYQRHEAPPQAQRFCNRFVRRVPPPSLVLLHKNKACAPPLRISCPTPR 447
P + G Q+H Q Q+ R P P V+ K+ +C+ L CPTP+
Sbjct: 30 PSLSGKQQQHVVDEQQQQVAGNSTDRAPTPFTVVCTKD-SCSAAL---CPTPK 78
>05_05_0236 -
23517512-23517682,23519436-23519516,23519685-23519891,
23519987-23520164,23520250-23520284,23520725-23520826,
23520908-23520964,23521236-23521325
Length = 306
Score = 29.5 bits (63), Expect = 2.4
Identities = 23/76 (30%), Positives = 36/76 (47%)
Frame = +3
Query: 324 SEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAXSSPRSRTRNTKRWRASFVLME 503
S A+ AA E ER ++ LEN ++ED + + L +A +S TR + + R F +
Sbjct: 7 SAAAGAAYEEERRKRVLENLKHLEDLGIKKMSKSLLEAARLQKS-TRASPKPRKKFEVGA 65
Query: 504 QD*RGRRNAPNKAIAK 551
+ R A N K
Sbjct: 66 TEVRRSSRARNSVSYK 81
>02_04_0554 -
23831212-23832163,23833173-23833438,23833694-23833748,
23834384-23834436,23834512-23834588,23834730-23834862,
23834958-23835098,23835840-23835960,23836137-23836242,
23836523-23836592,23836716-23836885,23837253-23837277,
23837662-23837777,23838926-23839217
Length = 858
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -3
Query: 399 HPPCWCGSP-APCVFARIHRRPGWPRTAWRWRSRDAPRTSRGPPPAVGYAV 250
HPP P AP ++A + R P +P AW+WR A +R G AV
Sbjct: 14 HPPALRARPLAPHLYAALPRAP-YP--AWQWRGARAASPARREAVVRGAAV 61
>01_04_0051 + 15430980-15431591
Length = 203
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 269 GGGPREVRGASRDRHRQAVRGQP 337
GG P V+ A RD HR+A+R +P
Sbjct: 93 GGAPAWVQDARRDAHRRALRRRP 115
>06_01_0893 -
6834350-6834464,6835042-6835218,6835301-6835350,
6836348-6836416,6836495-6836593,6836681-6836759,
6837604-6837704,6838645-6838713,6839548-6839588,
6839793-6841159,6841472-6841575,6841914-6842351,
6843040-6843567
Length = 1078
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Frame = +1
Query: 124 RRKCVKTKEXXG-KYKDECEEYHKRLQVEIMRREEAES---EVAALNRVSNC 267
R + V+ +E K + E EEYH +L +E+ RE+ E+ EVA + +C
Sbjct: 110 REESVRKREMEKEKQEAELEEYHMQLALEMSAREDPEATQIEVAKQISLGSC 161
>09_02_0015 -
2980811-2980924,2981231-2981266,2981447-2981519,
2981608-2981882,2982286-2982504,2983537-2983828,
2983863-2984221,2984634-2984714,2984746-2984889,
2985235-2985538,2985617-2985849
Length = 709
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +2
Query: 98 ARNDFRRFEEENA---SKRKRXMENIRTSARSTTNGCKWKLCE 217
A + R + E A +K K+ ME ARS T+G +WK+ E
Sbjct: 408 AGQEVRAADSEEAVFRTKTKKGMEGKAKEARSITSGDRWKIRE 450
>04_03_0659 -
18453778-18453903,18453976-18454963,18455496-18456229,
18456292-18456360,18456528-18456605,18456703-18456789,
18456881-18456931,18457021-18457092,18457177-18457304,
18458194-18458275,18458705-18458754,18459043-18459096,
18459586-18459675,18459903-18459983,18460443-18460538,
18460960-18461022,18461313-18461402,18461630-18461698,
18462051-18462291
Length = 1082
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 127 RKCVKTKEXXGKYKDECEEYHKRLQVEIMRRE 222
RK K K K EE+HK+ +++R+E
Sbjct: 69 RKSTKDKSKKNKVPANAEEFHKKYTTKVIRKE 100
>12_01_0524 - 4167867-4168445
Length = 192
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +2
Query: 320 AVRGQPGRR*IRANTQGAGEPHQHGG*SRCHLGGSTVTGEXIA 448
AV P +++ + A + H G R H G STV GE A
Sbjct: 109 AVAPLPSSTNLKSAVRSAMGSYSHSGTRRVHFGDSTVLGEKAA 151
>06_03_0827 - 25122413-25122430,25122970-25123063,25124210-25124535
Length = 145
Score = 27.9 bits (59), Expect = 7.4
Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = +2
Query: 254 AYPTAGGGPREVRGASRDRHRQAVRGQP-GRR*IRANTQGAGEPHQHGG*SR 406
A P G R G R R A G+ GRR RA + AG P GG R
Sbjct: 47 ASPGGEGARRGGVGVGRGGERAASGGEEQGRRRRRAGNEVAGRPEGRGGAGR 98
>04_04_1668 + 35217254-35218531
Length = 425
Score = 27.9 bits (59), Expect = 7.4
Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Frame = +2
Query: 305 DRHRQAVRGQPGRR*IRANTQGAGEPHQHGG*SRCHLGGSTVTGE----XIAEESDKKYE 472
D+ V GQ R RA T PH HG R GGS+ +G S +
Sbjct: 188 DKDAGGVVGQRNRSFGRAGTTRDSLPHGHGHHRRSSSGGSSGSGSGSHLRSLSWSVSRTW 247
Query: 473 EVARKLCSYGAGL 511
AR+L + G GL
Sbjct: 248 SAARQLQAIGGGL 260
>01_05_0024 -
17262504-17263308,17264251-17264399,17264879-17264978,
17265829-17265953,17267565-17267743,17269648-17270698
Length = 802
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Frame = +1
Query: 124 RRKCVKTKEXXGKYKDECEEYHKR-LQVEIMRREEA-ESEVA 243
RR+C +T+ + K + EE+H+R ++ + + E+A SEVA
Sbjct: 679 RRRCEETRRDLNRKKAQFEEWHQRYMERKASQGEDANNSEVA 720
>11_04_0221 + 15021145-15022497
Length = 450
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 318 WRWRSRDAPRTSRGPPPAV 262
W +RDAPRT+ PPP V
Sbjct: 330 WDSPARDAPRTTPPPPPPV 348
>05_01_0521 +
4500268-4500283,4500364-4500680,4500999-4501094,
4501219-4501296,4501333-4501557,4502842-4502910,
4502946-4503200
Length = 351
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 263 TAGGGPREVRGASRDRHRQAVRGQPGRR*IRANTQGAGEPHQHGG 397
+ G G R RG R R RG GR ++ ++ PH+H G
Sbjct: 36 SGGRGGRGGRGGRTPRGRGGGRGGGGRGGMKGGSKVVVVPHKHDG 80
>04_03_0978 - 21385894-21386097,21386330-21386791,21387580-21387786
Length = 290
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 533 RRVPPPSLVLLHKNKACAPPLRISCPTPR 447
RR PSL+ L + A PPLR + P+
Sbjct: 41 RRPATPSLLSLRRTHAAPPPLRAAAADPK 69
>03_01_0320 - 2510907-2512190
Length = 427
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = -3
Query: 420 PPRWQRDHPPCWCGSPAPCVFARIHRRPGWPRTAWRWRSRDAP 292
PP+ +R P CW PAP + R R+ DAP
Sbjct: 14 PPQPRRGKPGCWNTPPAPPKVCHYWKSGRCSRNPCRFLHTDAP 56
>01_06_1117 -
34633311-34634030,34634434-34634873,34635320-34635370,
34635522-34635642
Length = 443
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/70 (22%), Positives = 27/70 (38%)
Frame = +2
Query: 182 STTNGCKWKLCEEKKLSPKWLP*TAYPTAGGGPREVRGASRDRHRQAVRGQPGRR*IRAN 361
S G + KL LS W P P G V+G R + + +P + +
Sbjct: 211 SAMKGSRAKLGIVTSLSVSWAPDVYDPPVTSGSHTVKGHQRSSRKSHYKYKPAKSSSSRS 270
Query: 362 TQGAGEPHQH 391
+ G+ + +H
Sbjct: 271 SSGSKKDRKH 280
>01_03_0202 - 13762042-13762572
Length = 176
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -3
Query: 351 IHRRPGWPRTAW-RWRSRDAPRTSRGPPPA 265
I RRP TA R R+R PRT R PP+
Sbjct: 44 IRRRPSASATATVRRRARTRPRTRRSKPPS 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,399,640
Number of Sequences: 37544
Number of extensions: 335863
Number of successful extensions: 1232
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1231
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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