Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060298.seq
(650 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0) 47 1e-05
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.038
SB_36560| Best HMM Match : Tropomyosin (HMM E-Value=9.6e-07) 31 0.81
SB_27455| Best HMM Match : Extensin_2 (HMM E-Value=0.75) 31 0.81
SB_43203| Best HMM Match : She9_MDM33 (HMM E-Value=0.27) 30 1.9
SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 29 2.5
SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0) 29 3.3
SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14) 29 4.3
SB_47024| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_39747| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_11098| Best HMM Match : Mak16 (HMM E-Value=5.1) 28 7.6
SB_7550| Best HMM Match : INSIG (HMM E-Value=3.7) 28 7.6
SB_833| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0)
Length = 442
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/55 (40%), Positives = 35/55 (63%)
Frame = +2
Query: 449 EESDKKYEEVARKLCSYGAGLXXXXXXXXQSDCKIVELEEELRVVGNNLXSLEVS 613
EE++K+YEE++ +L L ++ ++ ELEEE+ +VGNNL SLE+S
Sbjct: 114 EEAEKQYEEISERLQELENELEEAEQKADAAEARVKELEEEVTLVGNNLRSLEIS 168
Score = 44.8 bits (101), Expect = 6e-05
Identities = 22/45 (48%), Positives = 30/45 (66%)
Frame = +3
Query: 303 ATATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQA 437
A +L+EA + ADESER RK LENR +++R+A LE Q + A
Sbjct: 65 ADTQGQLTEAEKQADESERARKVLENRGASDEERLASLERQYNDA 109
>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2193
Score = 35.5 bits (78), Expect = 0.038
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = +3
Query: 318 KLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAXSSPRSRTRNTKRWRASFVL 497
K+S+ E+ER +ALE+ D R++ LE L A + + +WR
Sbjct: 1272 KVSKLESDLAENERENEALEHSLECRDKRISELENSLKSAQDNHMADKNEMLQWRKRCAQ 1331
Query: 498 MEQD*RGRRN 527
EQD + +N
Sbjct: 1332 AEQDLQASKN 1341
>SB_36560| Best HMM Match : Tropomyosin (HMM E-Value=9.6e-07)
Length = 245
Score = 31.1 bits (67), Expect = 0.81
Identities = 24/105 (22%), Positives = 46/105 (43%)
Frame = +3
Query: 111 LDVLKKKMRQNERGXWKI*GRVRGVPQTVASGNYAKRRS*VRSGCPEPRIQXXXXXXXXX 290
+DVLKKK+ Q + K + R + + + + + + + + RI+
Sbjct: 1 MDVLKKKVVQTRQEIEKAENKERYIRKLLRLTSERATLAEMEADGLKNRIKEMEKQIERV 60
Query: 291 XXXXATATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQ 425
L+ AD+SE+ RKA+E + D++A+LE +
Sbjct: 61 NARTERLGQGLTAKESEADDSEKDRKAMEGKEYDHSDQIALLETR 105
>SB_27455| Best HMM Match : Extensin_2 (HMM E-Value=0.75)
Length = 159
Score = 31.1 bits (67), Expect = 0.81
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -3
Query: 456 DSSAMXSPVTVEPPRWQRD-HPPCWCGSPAPCVFARIHRRPGWPR 325
DSS + PP+W+RD PP W +P + R P W R
Sbjct: 66 DSSPPQWKLDSSPPQWKRDSSPPQWKRDSSPPQWKRDSSPPQWKR 110
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = -3
Query: 480 ATSSYFLSDSSAMXSPVTVEPPRWQRD-HPPCWCGSPAPCVFARIHRRPGWPRTAW--RW 310
+T + DSS PP+W+RD PP W +P + R P W R + +W
Sbjct: 40 STPPQWKRDSSPPQWKRDSSPPQWKRDSSPPQWKLDSSPPQWKRDSSPPQWKRDSSPPQW 99
Query: 309 RSRDAP 292
+ +P
Sbjct: 100 KRDSSP 105
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = -3
Query: 420 PPRWQRD-HPPCWCGSPAPCVFARIHRRPGW--PRTAWRW-RSRDAPRTSRG 277
PP+W+RD PP W +P + R P W T +W R P+ RG
Sbjct: 105 PPQWKRDSSPPQWKQDLSPPQWKRESTPPQWKLESTPPQWKRDSSPPQWKRG 156
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = -3
Query: 456 DSSAMXSPVTVEPPRWQRDH-PPCWCGSPAPCVFARIHRRPGWPR 325
DSS + PP+W+R+ PP W P + R P W R
Sbjct: 111 DSSPPQWKQDLSPPQWKRESTPPQWKLESTPPQWKRDSSPPQWKR 155
>SB_43203| Best HMM Match : She9_MDM33 (HMM E-Value=0.27)
Length = 447
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +3
Query: 348 ESERIRKALENRTNMEDDRVAILEAQLSQAXSSPRSRTRNTKRW 479
E ++++ E N+E D A L A + + R+R TK W
Sbjct: 165 EEKKLKLDFEEMENLERDHFASLSAVVRDSHEKERARAERTKYW 208
>SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 1841
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 166 KDECEEYHKRLQVEIMRREEAESEVAALNRVS 261
K ECE Y+ L V + RR+ V LNR++
Sbjct: 1740 KKECESYYNSLAVVLQRRDWENPGVTQLNRLA 1771
>SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 2682
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = +2
Query: 50 AFDFNTKVNQNDDKHAARNDFRRFEEENASKRKRXMENI 166
A ++N + +N+ AAR + ++ E+ + R++ +ENI
Sbjct: 1632 ALEYNLRGRRNEVAGAARRECKKLSTEDPNTRRKGLENI 1670
>SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14)
Length = 1774
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +1
Query: 124 RRKCVKTKEXXGKYKDECEEYHKRLQVEIMR-REEAESEVAALN-RVSNCW 270
R++ KE Y DE E Y RL E M+ RE S++ AL + N W
Sbjct: 545 RKRLRNMKEYLDDYADEDERYFMRLLREFMKSRETPISKIPALGFKRVNLW 595
>SB_47024| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 975
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = +1
Query: 64 HKSESK*RQTCSKERF*TF*RRKCVKTKEXXGKYKDECEEYHKRLQVEIMRREEAESEV 240
HK E+K ++ SKE R+K K + + C EY + + +++R++E E E+
Sbjct: 160 HKEEAKNKEKLSKE------RQK--KLENMLQSERQRCVEYQRLYEEQVLRQKEMEREL 210
>SB_39747| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 356
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = -1
Query: 536 VRRVPPPSLVLLHKNKACA---PPLRISCPTPR 447
++RVP PS VL+ + K CA PL + P PR
Sbjct: 218 LKRVPDPSTVLVFQPKYCARPGDPLVLERPPPR 250
>SB_11098| Best HMM Match : Mak16 (HMM E-Value=5.1)
Length = 460
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 53 FDFNTKVNQNDDKHAARNDFRRFEEENASKRKRXMENIRTS 175
F +N+ +N ND R +FR E++N + N+ TS
Sbjct: 101 FFYNSILNSNDKWQLHRKEFRLIEKKNWKGYAENLNNLLTS 141
>SB_7550| Best HMM Match : INSIG (HMM E-Value=3.7)
Length = 377
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -1
Query: 566 PQAQRFCNRFVRRVPPPSLVLLHKNKAC 483
P + +V RV PPS V LH N AC
Sbjct: 311 PVCLALLHSWVHRVDPPSPVCLHGNLAC 338
>SB_833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 242
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 318 KLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQ 434
KL++ D E +RK LE+ D+++ LEA+L +
Sbjct: 72 KLADLKDRTDTHEEVRKELEDYEMEGDEKLLDLEAKLKE 110
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,882,427
Number of Sequences: 59808
Number of extensions: 328254
Number of successful extensions: 3337
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3321
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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