Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060298.seq
         (650 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    30   0.055
AJ439060-18|CAD27769.1|  257|Anopheles gambiae hypothetical prot...    24   4.8  
AF117750-1|AAD38336.1|  380|Anopheles gambiae serine protease 18...    23   8.4  

>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
           topoisomerase protein.
          Length = 1039

 Score = 30.3 bits (65), Expect = 0.055
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
 Frame = +2

Query: 362 TQGAGEPHQHGG*SRCHL----GGSTVTGEXIAEESDKKYEEVARKLCS 496
           T G GE    GG + C      GG T TG  +   S+K Y  V +KL S
Sbjct: 181 TNGGGELTTGGGTNGCTKAGGGGGGTGTGGGLVSSSEKNYNPVRKKLGS 229


>AJ439060-18|CAD27769.1|  257|Anopheles gambiae hypothetical protein
           protein.
          Length = 257

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -1

Query: 581 RHEAPPQAQRFCNRFVRRVPPPSLVLLHKNKA 486
           +H    +A++FCN  +R     S    H N+A
Sbjct: 147 KHTFAQEAKQFCNAEIRAAKADSPENCHSNRA 178


>AF117750-1|AAD38336.1|  380|Anopheles gambiae serine protease 18D
           protein.
          Length = 380

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = -3

Query: 384 CGSPAPCVFARIHRRPGW 331
           CGS  P ++ ++H    W
Sbjct: 356 CGSSTPAIYTKVHPYLDW 373


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 542,685
Number of Sequences: 2352
Number of extensions: 9564
Number of successful extensions: 22
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 64395870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)