Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060298.seq
(650 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D38542-1|BAA07545.1| 256|Caenorhabditis elegans CeTMIII protein. 71 7e-13
D38539-3|BAA07542.1| 256|Caenorhabditis elegans CeTMIII protein. 71 7e-13
AL132877-5|CAD45604.1| 256|Caenorhabditis elegans Hypothetical ... 71 7e-13
D38541-1|BAA07544.1| 284|Caenorhabditis elegans CeTMII protein. 71 9e-13
D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein. 71 9e-13
D38539-2|BAA07541.1| 284|Caenorhabditis elegans CeTMII protein. 71 9e-13
D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein. 71 9e-13
AL132877-4|CAC70112.1| 284|Caenorhabditis elegans Hypothetical ... 71 9e-13
AL132877-2|CAC70113.2| 193|Caenorhabditis elegans Hypothetical ... 71 9e-13
AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical ... 71 9e-13
AL132877-3|CAC70115.1| 256|Caenorhabditis elegans Hypothetical ... 62 3e-10
AF298180-1|AAG10302.1| 256|Caenorhabditis elegans tropomyosin i... 62 3e-10
X74838-1|CAA52832.1| 231|Caenorhabditis elegans cuticlin 2 prot... 24 3.7
Z81088-5|CAB03133.1| 215|Caenorhabditis elegans Hypothetical pr... 24 3.7
AF003150-3|AAB54214.1| 208|Caenorhabditis elegans Collagen prot... 29 3.8
U23510-9|AAC46781.1| 340|Caenorhabditis elegans Associated with... 28 5.0
Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical p... 27 8.7
Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical p... 27 8.7
Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical p... 27 8.7
Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical pr... 27 8.7
>D38542-1|BAA07545.1| 256|Caenorhabditis elegans CeTMIII protein.
Length = 256
Score = 70.9 bits (166), Expect = 7e-13
Identities = 38/62 (61%), Positives = 43/62 (69%)
Frame = +2
Query: 443 IAEESDKKYEEVARKLCSYGAGLXXXXXXXXQSDCKIVELEEELRVVGNNLXSLEVSXEX 622
IAE++D+KYEEVARKL A L + KIVELEEELRVVGNNL SLEVS E
Sbjct: 126 IAEDADRKYEEVARKLAMVEADLERAEERAEAGENKIVELEEELRVVGNNLKSLEVSEEK 185
Query: 623 AI 628
A+
Sbjct: 186 AL 187
Score = 59.3 bits (137), Expect = 2e-09
Identities = 38/138 (27%), Positives = 61/138 (44%)
Frame = +3
Query: 96 QQGTILDVLKKKMRQNERGXWKI*GRVRGVPQTVASGNYAKRRS*VRSGCPEPRIQXXXX 275
QQ ++LDVLKKKMRQ V + + + + RI
Sbjct: 10 QQTSLLDVLKKKMRQAREEAEAAKDEADEVKRQLEEERKKREDAEAEVAALNRRIVLVEE 69
Query: 276 XXXXXXXXXATATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAXSSPRS 455
TAT+KL +A++AADE++R RK++E R+ +++R LE Q+ +A
Sbjct: 70 DLERTEDRLKTATSKLEQATKAADEADRARKSMETRSQQDEERANFLETQVDEAKVIAED 129
Query: 456 RTRNTKRWRASFVLMEQD 509
R + ++E D
Sbjct: 130 ADRKYEEVARKLAMVEAD 147
Score = 40.7 bits (91), Expect = 9e-04
Identities = 19/44 (43%), Positives = 30/44 (68%)
Frame = +1
Query: 124 RRKCVKTKEXXGKYKDECEEYHKRLQVEIMRREEAESEVAALNR 255
++K + +E KDE +E ++L+ E +RE+AE+EVAALNR
Sbjct: 19 KKKMRQAREEAEAAKDEADEVKRQLEEERKKREDAEAEVAALNR 62
>D38539-3|BAA07542.1| 256|Caenorhabditis elegans CeTMIII protein.
Length = 256
Score = 70.9 bits (166), Expect = 7e-13
Identities = 38/62 (61%), Positives = 43/62 (69%)
Frame = +2
Query: 443 IAEESDKKYEEVARKLCSYGAGLXXXXXXXXQSDCKIVELEEELRVVGNNLXSLEVSXEX 622
IAE++D+KYEEVARKL A L + KIVELEEELRVVGNNL SLEVS E
Sbjct: 126 IAEDADRKYEEVARKLAMVEADLERAEERAEAGENKIVELEEELRVVGNNLKSLEVSEEK 185
Query: 623 AI 628
A+
Sbjct: 186 AL 187
Score = 59.3 bits (137), Expect = 2e-09
Identities = 38/138 (27%), Positives = 61/138 (44%)
Frame = +3
Query: 96 QQGTILDVLKKKMRQNERGXWKI*GRVRGVPQTVASGNYAKRRS*VRSGCPEPRIQXXXX 275
QQ ++LDVLKKKMRQ V + + + + RI
Sbjct: 10 QQTSLLDVLKKKMRQAREEAEAAKDEADEVKRQLEEERKKREDAEAEVAALNRRIVLVEE 69
Query: 276 XXXXXXXXXATATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAXSSPRS 455
TAT+KL +A++AADE++R RK++E R+ +++R LE Q+ +A
Sbjct: 70 DLERTEDRLKTATSKLEQATKAADEADRARKSMETRSQQDEERANFLETQVDEAKVIAED 129
Query: 456 RTRNTKRWRASFVLMEQD 509
R + ++E D
Sbjct: 130 ADRKYEEVARKLAMVEAD 147
Score = 40.7 bits (91), Expect = 9e-04
Identities = 19/44 (43%), Positives = 30/44 (68%)
Frame = +1
Query: 124 RRKCVKTKEXXGKYKDECEEYHKRLQVEIMRREEAESEVAALNR 255
++K + +E KDE +E ++L+ E +RE+AE+EVAALNR
Sbjct: 19 KKKMRQAREEAEAAKDEADEVKRQLEEERKKREDAEAEVAALNR 62
>AL132877-5|CAD45604.1| 256|Caenorhabditis elegans Hypothetical
protein Y105E8B.1e protein.
Length = 256
Score = 70.9 bits (166), Expect = 7e-13
Identities = 38/62 (61%), Positives = 43/62 (69%)
Frame = +2
Query: 443 IAEESDKKYEEVARKLCSYGAGLXXXXXXXXQSDCKIVELEEELRVVGNNLXSLEVSXEX 622
IAE++D+KYEEVARKL A L + KIVELEEELRVVGNNL SLEVS E
Sbjct: 126 IAEDADRKYEEVARKLAMVEADLERAEERAEAGENKIVELEEELRVVGNNLKSLEVSEEK 185
Query: 623 AI 628
A+
Sbjct: 186 AL 187
Score = 59.3 bits (137), Expect = 2e-09
Identities = 38/138 (27%), Positives = 61/138 (44%)
Frame = +3
Query: 96 QQGTILDVLKKKMRQNERGXWKI*GRVRGVPQTVASGNYAKRRS*VRSGCPEPRIQXXXX 275
QQ ++LDVLKKKMRQ V + + + + RI
Sbjct: 10 QQTSLLDVLKKKMRQAREEAEAAKDEADEVKRQLEEERKKREDAEAEVAALNRRIVLVEE 69
Query: 276 XXXXXXXXXATATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAXSSPRS 455
TAT+KL +A++AADE++R RK++E R+ +++R LE Q+ +A
Sbjct: 70 DLERTEDRLKTATSKLEQATKAADEADRARKSMETRSQQDEERANFLETQVDEAKVIAED 129
Query: 456 RTRNTKRWRASFVLMEQD 509
R + ++E D
Sbjct: 130 ADRKYEEVARKLAMVEAD 147
Score = 40.7 bits (91), Expect = 9e-04
Identities = 19/44 (43%), Positives = 30/44 (68%)
Frame = +1
Query: 124 RRKCVKTKEXXGKYKDECEEYHKRLQVEIMRREEAESEVAALNR 255
++K + +E KDE +E ++L+ E +RE+AE+EVAALNR
Sbjct: 19 KKKMRQAREEAEAAKDEADEVKRQLEEERKKREDAEAEVAALNR 62
>D38541-1|BAA07544.1| 284|Caenorhabditis elegans CeTMII protein.
Length = 284
Score = 70.5 bits (165), Expect = 9e-13
Identities = 37/64 (57%), Positives = 44/64 (68%)
Frame = +2
Query: 437 EXIAEESDKKYEEVARKLCSYGAGLXXXXXXXXQSDCKIVELEEELRVVGNNLXSLEVSX 616
+ +AEE+D+KY+EVARKL A L + KIVELEEELRVVGNNL SLEVS
Sbjct: 152 QLLAEEADRKYDEVARKLAMVEADLERAEERAEAGENKIVELEEELRVVGNNLKSLEVSE 211
Query: 617 EXAI 628
E A+
Sbjct: 212 EKAL 215
Score = 50.0 bits (114), Expect = 1e-06
Identities = 25/67 (37%), Positives = 36/67 (53%)
Frame = +3
Query: 309 ATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAXSSPRSRTRNTKRWRAS 488
AT KL EA+ DESER+RK +ENR+ +++R +EAQL +A R
Sbjct: 109 ATEKLEEATHNVDESERVRKVMENRSLQDEERANTVEAQLKEAQLLAEEADRKYDEVARK 168
Query: 489 FVLMEQD 509
++E D
Sbjct: 169 LAMVEAD 175
>D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 70.5 bits (165), Expect = 9e-13
Identities = 37/64 (57%), Positives = 44/64 (68%)
Frame = +2
Query: 437 EXIAEESDKKYEEVARKLCSYGAGLXXXXXXXXQSDCKIVELEEELRVVGNNLXSLEVSX 616
+ +AEE+D+KY+EVARKL A L + KIVELEEELRVVGNNL SLEVS
Sbjct: 152 QLLAEEADRKYDEVARKLAMVEADLERAEERAEAGENKIVELEEELRVVGNNLKSLEVSE 211
Query: 617 EXAI 628
E A+
Sbjct: 212 EKAL 215
Score = 50.0 bits (114), Expect = 1e-06
Identities = 25/67 (37%), Positives = 36/67 (53%)
Frame = +3
Query: 309 ATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAXSSPRSRTRNTKRWRAS 488
AT KL EA+ DESER+RK +ENR+ +++R +EAQL +A R
Sbjct: 109 ATEKLEEATHNVDESERVRKVMENRSLQDEERANTVEAQLKEAQLLAEEADRKYDEVARK 168
Query: 489 FVLMEQD 509
++E D
Sbjct: 169 LAMVEAD 175
>D38539-2|BAA07541.1| 284|Caenorhabditis elegans CeTMII protein.
Length = 284
Score = 70.5 bits (165), Expect = 9e-13
Identities = 37/64 (57%), Positives = 44/64 (68%)
Frame = +2
Query: 437 EXIAEESDKKYEEVARKLCSYGAGLXXXXXXXXQSDCKIVELEEELRVVGNNLXSLEVSX 616
+ +AEE+D+KY+EVARKL A L + KIVELEEELRVVGNNL SLEVS
Sbjct: 152 QLLAEEADRKYDEVARKLAMVEADLERAEERAEAGENKIVELEEELRVVGNNLKSLEVSE 211
Query: 617 EXAI 628
E A+
Sbjct: 212 EKAL 215
Score = 50.0 bits (114), Expect = 1e-06
Identities = 25/67 (37%), Positives = 36/67 (53%)
Frame = +3
Query: 309 ATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAXSSPRSRTRNTKRWRAS 488
AT KL EA+ DESER+RK +ENR+ +++R +EAQL +A R
Sbjct: 109 ATEKLEEATHNVDESERVRKVMENRSLQDEERANTVEAQLKEAQLLAEEADRKYDEVARK 168
Query: 489 FVLMEQD 509
++E D
Sbjct: 169 LAMVEAD 175
>D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 70.5 bits (165), Expect = 9e-13
Identities = 37/64 (57%), Positives = 44/64 (68%)
Frame = +2
Query: 437 EXIAEESDKKYEEVARKLCSYGAGLXXXXXXXXQSDCKIVELEEELRVVGNNLXSLEVSX 616
+ +AEE+D+KY+EVARKL A L + KIVELEEELRVVGNNL SLEVS
Sbjct: 152 QLLAEEADRKYDEVARKLAMVEADLERAEERAEAGENKIVELEEELRVVGNNLKSLEVSE 211
Query: 617 EXAI 628
E A+
Sbjct: 212 EKAL 215
Score = 50.0 bits (114), Expect = 1e-06
Identities = 25/67 (37%), Positives = 36/67 (53%)
Frame = +3
Query: 309 ATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAXSSPRSRTRNTKRWRAS 488
AT KL EA+ DESER+RK +ENR+ +++R +EAQL +A R
Sbjct: 109 ATEKLEEATHNVDESERVRKVMENRSLQDEERANTVEAQLKEAQLLAEEADRKYDEVARK 168
Query: 489 FVLMEQD 509
++E D
Sbjct: 169 LAMVEAD 175
>AL132877-4|CAC70112.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1d protein.
Length = 284
Score = 70.5 bits (165), Expect = 9e-13
Identities = 37/64 (57%), Positives = 44/64 (68%)
Frame = +2
Query: 437 EXIAEESDKKYEEVARKLCSYGAGLXXXXXXXXQSDCKIVELEEELRVVGNNLXSLEVSX 616
+ +AEE+D+KY+EVARKL A L + KIVELEEELRVVGNNL SLEVS
Sbjct: 152 QLLAEEADRKYDEVARKLAMVEADLERAEERAEAGENKIVELEEELRVVGNNLKSLEVSE 211
Query: 617 EXAI 628
E A+
Sbjct: 212 EKAL 215
Score = 50.0 bits (114), Expect = 1e-06
Identities = 25/67 (37%), Positives = 36/67 (53%)
Frame = +3
Query: 309 ATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAXSSPRSRTRNTKRWRAS 488
AT KL EA+ DESER+RK +ENR+ +++R +EAQL +A R
Sbjct: 109 ATEKLEEATHNVDESERVRKVMENRSLQDEERANTVEAQLKEAQLLAEEADRKYDEVARK 168
Query: 489 FVLMEQD 509
++E D
Sbjct: 169 LAMVEAD 175
>AL132877-2|CAC70113.2| 193|Caenorhabditis elegans Hypothetical
protein Y105E8B.1b protein.
Length = 193
Score = 70.5 bits (165), Expect = 9e-13
Identities = 37/64 (57%), Positives = 44/64 (68%)
Frame = +2
Query: 437 EXIAEESDKKYEEVARKLCSYGAGLXXXXXXXXQSDCKIVELEEELRVVGNNLXSLEVSX 616
+ +AEE+D+KY+EVARKL A L + KIVELEEELRVVGNNL SLEVS
Sbjct: 61 QLLAEEADRKYDEVARKLAMVEADLERAEERAEAGENKIVELEEELRVVGNNLKSLEVSE 120
Query: 617 EXAI 628
E A+
Sbjct: 121 EKAL 124
Score = 50.0 bits (114), Expect = 1e-06
Identities = 25/67 (37%), Positives = 36/67 (53%)
Frame = +3
Query: 309 ATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAXSSPRSRTRNTKRWRAS 488
AT KL EA+ DESER+RK +ENR+ +++R +EAQL +A R
Sbjct: 18 ATEKLEEATHNVDESERVRKVMENRSLQDEERANTVEAQLKEAQLLAEEADRKYDEVARK 77
Query: 489 FVLMEQD 509
++E D
Sbjct: 78 LAMVEAD 84
>AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1a protein.
Length = 284
Score = 70.5 bits (165), Expect = 9e-13
Identities = 37/64 (57%), Positives = 44/64 (68%)
Frame = +2
Query: 437 EXIAEESDKKYEEVARKLCSYGAGLXXXXXXXXQSDCKIVELEEELRVVGNNLXSLEVSX 616
+ +AEE+D+KY+EVARKL A L + KIVELEEELRVVGNNL SLEVS
Sbjct: 152 QLLAEEADRKYDEVARKLAMVEADLERAEERAEAGENKIVELEEELRVVGNNLKSLEVSE 211
Query: 617 EXAI 628
E A+
Sbjct: 212 EKAL 215
Score = 50.0 bits (114), Expect = 1e-06
Identities = 25/67 (37%), Positives = 36/67 (53%)
Frame = +3
Query: 309 ATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAXSSPRSRTRNTKRWRAS 488
AT KL EA+ DESER+RK +ENR+ +++R +EAQL +A R
Sbjct: 109 ATEKLEEATHNVDESERVRKVMENRSLQDEERANTVEAQLKEAQLLAEEADRKYDEVARK 168
Query: 489 FVLMEQD 509
++E D
Sbjct: 169 LAMVEAD 175
>AL132877-3|CAC70115.1| 256|Caenorhabditis elegans Hypothetical
protein Y105E8B.1c protein.
Length = 256
Score = 62.5 bits (145), Expect = 3e-10
Identities = 35/64 (54%), Positives = 40/64 (62%)
Frame = +2
Query: 437 EXIAEESDKKYEEVARKLCSYGAGLXXXXXXXXQSDCKIVELEEELRVVGNNLXSLEVSX 616
+ I E++ K EEVARKL A L + KIVELEEELRVVGNNL SLEVS
Sbjct: 124 QSILHETENKAEEVARKLAMVEADLERAEERAEAGENKIVELEEELRVVGNNLKSLEVSE 183
Query: 617 EXAI 628
E A+
Sbjct: 184 EKAL 187
Score = 60.5 bits (140), Expect = 1e-09
Identities = 40/138 (28%), Positives = 62/138 (44%)
Frame = +3
Query: 96 QQGTILDVLKKKMRQNERGXWKI*GRVRGVPQTVASGNYAKRRS*VRSGCPEPRIQXXXX 275
QQ ++LDVLKKKMRQ V + + + + RI
Sbjct: 10 QQTSLLDVLKKKMRQAREEAEAAKDEADEVKRQLEEERKKREDAEAEVAALNRRIVLVEE 69
Query: 276 XXXXXXXXXATATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAXSSPRS 455
TAT+KL +A++AADE++R R+AL N+ +M+DDR + LE +L + S
Sbjct: 70 DLERTEDRLKTATSKLEQATKAADEADRSRRALSNQIDMDDDRCSDLERKLRECQSILHE 129
Query: 456 RTRNTKRWRASFVLMEQD 509
+ ++E D
Sbjct: 130 TENKAEEVARKLAMVEAD 147
Score = 40.7 bits (91), Expect = 9e-04
Identities = 19/44 (43%), Positives = 30/44 (68%)
Frame = +1
Query: 124 RRKCVKTKEXXGKYKDECEEYHKRLQVEIMRREEAESEVAALNR 255
++K + +E KDE +E ++L+ E +RE+AE+EVAALNR
Sbjct: 19 KKKMRQAREEAEAAKDEADEVKRQLEEERKKREDAEAEVAALNR 62
>AF298180-1|AAG10302.1| 256|Caenorhabditis elegans tropomyosin
isoform IV protein.
Length = 256
Score = 62.5 bits (145), Expect = 3e-10
Identities = 35/64 (54%), Positives = 40/64 (62%)
Frame = +2
Query: 437 EXIAEESDKKYEEVARKLCSYGAGLXXXXXXXXQSDCKIVELEEELRVVGNNLXSLEVSX 616
+ I E++ K EEVARKL A L + KIVELEEELRVVGNNL SLEVS
Sbjct: 124 QSILHETENKAEEVARKLAMVEADLERAEERAEAGENKIVELEEELRVVGNNLKSLEVSE 183
Query: 617 EXAI 628
E A+
Sbjct: 184 EKAL 187
Score = 60.5 bits (140), Expect = 1e-09
Identities = 40/138 (28%), Positives = 62/138 (44%)
Frame = +3
Query: 96 QQGTILDVLKKKMRQNERGXWKI*GRVRGVPQTVASGNYAKRRS*VRSGCPEPRIQXXXX 275
QQ ++LDVLKKKMRQ V + + + + RI
Sbjct: 10 QQTSLLDVLKKKMRQAREEAEAAKDEADEVKRQLEEERKKREDAEAEVAALNRRIVLVEE 69
Query: 276 XXXXXXXXXATATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAXSSPRS 455
TAT+KL +A++AADE++R R+AL N+ +M+DDR + LE +L + S
Sbjct: 70 DLERTEDRLKTATSKLEQATKAADEADRSRRALSNQIDMDDDRCSDLERKLRECQSILHE 129
Query: 456 RTRNTKRWRASFVLMEQD 509
+ ++E D
Sbjct: 130 TENKAEEVARKLAMVEAD 147
Score = 40.7 bits (91), Expect = 9e-04
Identities = 19/44 (43%), Positives = 30/44 (68%)
Frame = +1
Query: 124 RRKCVKTKEXXGKYKDECEEYHKRLQVEIMRREEAESEVAALNR 255
++K + +E KDE +E ++L+ E +RE+AE+EVAALNR
Sbjct: 19 KKKMRQAREEAEAAKDEADEVKRQLEEERKKREDAEAEVAALNR 62
>X74838-1|CAA52832.1| 231|Caenorhabditis elegans cuticlin 2
protein.
Length = 231
Score = 23.8 bits (49), Expect(2) = 3.7
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -3
Query: 384 CGSPAPCVFARIHRRPGWPRTA 319
CG PAPC A I G TA
Sbjct: 67 CGGPAPCAAAPIAAPAGGYATA 88
Score = 23.4 bits (48), Expect(2) = 3.7
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -3
Query: 396 PPCWCGSPA 370
PPC CG+PA
Sbjct: 36 PPCGCGAPA 44
>Z81088-5|CAB03133.1| 215|Caenorhabditis elegans Hypothetical
protein F53F1.5 protein.
Length = 215
Score = 23.8 bits (49), Expect(2) = 3.7
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -3
Query: 384 CGSPAPCVFARIHRRPGWPRTA 319
CG PAPC A I G TA
Sbjct: 67 CGGPAPCAAAPIAAPAGGYATA 88
Score = 23.4 bits (48), Expect(2) = 3.7
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -3
Query: 396 PPCWCGSPA 370
PPC CG+PA
Sbjct: 36 PPCGCGAPA 44
>AF003150-3|AAB54214.1| 208|Caenorhabditis elegans Collagen protein
55 protein.
Length = 208
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +2
Query: 260 PTAGGGPREVRGASRDRHRQAVRGQPGRR*IRANTQGAGEPHQHGG 397
P GP GA ++ V GQPG + G G+P Q GG
Sbjct: 103 PAGPPGPPGQPGAQGEQGHVEVSGQPGAPRPQGPAGGPGQPVQSGG 148
>U23510-9|AAC46781.1| 340|Caenorhabditis elegans Associated with
ran (nuclear import/export) function protein 5 protein.
Length = 340
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 59 FNTKVNQNDDKHAARNDFRRFEEENASKRKR-XMENIRTSARSTTNG 196
F V ++DDK+ A+N FR+ E+ A + K ++ TS+ T G
Sbjct: 103 FQNAVKKDDDKNGAKN-FRKEAEQEAERAKEAEKQHAGTSSVEITTG 148
>Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical protein
F07A11.6e protein.
Length = 2101
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/69 (23%), Positives = 30/69 (43%)
Frame = +2
Query: 74 NQNDDKHAARNDFRRFEEENASKRKRXMENIRTSARSTTNGCKWKLCEEKKLSPKWLP*T 253
++++ K A+ DFR E+ S + + R+ +ST++ +E+K P
Sbjct: 1073 SEDESKKNAKRDFRDIPHEDVSDEEETEDGSRSRRQSTSSTISNVTAKERKEKSGKTPLR 1132
Query: 254 AYPTAGGGP 280
P G P
Sbjct: 1133 IVPEPTGTP 1141
>Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical protein
F07A11.6c protein.
Length = 2392
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/69 (23%), Positives = 30/69 (43%)
Frame = +2
Query: 74 NQNDDKHAARNDFRRFEEENASKRKRXMENIRTSARSTTNGCKWKLCEEKKLSPKWLP*T 253
++++ K A+ DFR E+ S + + R+ +ST++ +E+K P
Sbjct: 1364 SEDESKKNAKRDFRDIPHEDVSDEEETEDGSRSRRQSTSSTISNVTAKERKEKSGKTPLR 1423
Query: 254 AYPTAGGGP 280
P G P
Sbjct: 1424 IVPEPTGTP 1432
>Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical protein
F07A11.6b protein.
Length = 2407
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/69 (23%), Positives = 30/69 (43%)
Frame = +2
Query: 74 NQNDDKHAARNDFRRFEEENASKRKRXMENIRTSARSTTNGCKWKLCEEKKLSPKWLP*T 253
++++ K A+ DFR E+ S + + R+ +ST++ +E+K P
Sbjct: 1379 SEDESKKNAKRDFRDIPHEDVSDEEETEDGSRSRRQSTSSTISNVTAKERKEKSGKTPLR 1438
Query: 254 AYPTAGGGP 280
P G P
Sbjct: 1439 IVPEPTGTP 1447
>Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical protein
F07A11.6a protein.
Length = 2211
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/69 (23%), Positives = 30/69 (43%)
Frame = +2
Query: 74 NQNDDKHAARNDFRRFEEENASKRKRXMENIRTSARSTTNGCKWKLCEEKKLSPKWLP*T 253
++++ K A+ DFR E+ S + + R+ +ST++ +E+K P
Sbjct: 1379 SEDESKKNAKRDFRDIPHEDVSDEEETEDGSRSRRQSTSSTISNVTAKERKEKSGKTPLR 1438
Query: 254 AYPTAGGGP 280
P G P
Sbjct: 1439 IVPEPTGTP 1447
>Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical
protein T05A1.2 protein.
Length = 300
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +2
Query: 275 GPREVRGASRDRHRQAVRGQPGRR*IRANTQGAGEPHQHGG*SRCHLGGSTVT 433
GPR RG + + + G PG+ R G GEP Q G + L GS T
Sbjct: 226 GPRGPRGVAGIKGKDGAPGSPGQPGPRG---GPGEPGQDGAPGQPGLPGSDGT 275
>Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical
protein F07A11.6e protein.
Length = 2101
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/69 (23%), Positives = 30/69 (43%)
Frame = +2
Query: 74 NQNDDKHAARNDFRRFEEENASKRKRXMENIRTSARSTTNGCKWKLCEEKKLSPKWLP*T 253
++++ K A+ DFR E+ S + + R+ +ST++ +E+K P
Sbjct: 1073 SEDESKKNAKRDFRDIPHEDVSDEEETEDGSRSRRQSTSSTISNVTAKERKEKSGKTPLR 1132
Query: 254 AYPTAGGGP 280
P G P
Sbjct: 1133 IVPEPTGTP 1141
>Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical
protein F07A11.6c protein.
Length = 2392
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/69 (23%), Positives = 30/69 (43%)
Frame = +2
Query: 74 NQNDDKHAARNDFRRFEEENASKRKRXMENIRTSARSTTNGCKWKLCEEKKLSPKWLP*T 253
++++ K A+ DFR E+ S + + R+ +ST++ +E+K P
Sbjct: 1364 SEDESKKNAKRDFRDIPHEDVSDEEETEDGSRSRRQSTSSTISNVTAKERKEKSGKTPLR 1423
Query: 254 AYPTAGGGP 280
P G P
Sbjct: 1424 IVPEPTGTP 1432
>Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical
protein F07A11.6b protein.
Length = 2407
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/69 (23%), Positives = 30/69 (43%)
Frame = +2
Query: 74 NQNDDKHAARNDFRRFEEENASKRKRXMENIRTSARSTTNGCKWKLCEEKKLSPKWLP*T 253
++++ K A+ DFR E+ S + + R+ +ST++ +E+K P
Sbjct: 1379 SEDESKKNAKRDFRDIPHEDVSDEEETEDGSRSRRQSTSSTISNVTAKERKEKSGKTPLR 1438
Query: 254 AYPTAGGGP 280
P G P
Sbjct: 1439 IVPEPTGTP 1447
>Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical protein
F07A11.6a protein.
Length = 2211
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/69 (23%), Positives = 30/69 (43%)
Frame = +2
Query: 74 NQNDDKHAARNDFRRFEEENASKRKRXMENIRTSARSTTNGCKWKLCEEKKLSPKWLP*T 253
++++ K A+ DFR E+ S + + R+ +ST++ +E+K P
Sbjct: 1379 SEDESKKNAKRDFRDIPHEDVSDEEETEDGSRSRRQSTSSTISNVTAKERKEKSGKTPLR 1438
Query: 254 AYPTAGGGP 280
P G P
Sbjct: 1439 IVPEPTGTP 1447
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,219,457
Number of Sequences: 27780
Number of extensions: 246664
Number of successful extensions: 975
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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