Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060298.seq
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79830.1 68414.m09326 expressed protein weak similarity to TA...    31   0.50 
At5g01220.1 68418.m00027 UDP-sulfoquinovose:DAG sulfoquinovosylt...    29   3.5  
At5g38880.1 68418.m04702 expressed protein                             28   4.7  
At5g62460.1 68418.m07838 zinc finger (C3HC4-type RING finger) fa...    28   6.2  
At5g52470.1 68418.m06510 fibrillarin 1 (FBR1) (FIB1) (SKIP7) ide...    28   6.2  
At2g31690.1 68415.m03868 lipase class 3 family protein similar t...    28   6.2  
At1g60730.1 68414.m06836 aldo/keto reductase family protein cont...    28   6.2  
At3g63070.1 68416.m07084 PWWP domain-containing protein putative...    27   8.2  
At1g55420.1 68414.m06339 DC1 domain-containing protein contains ...    27   8.2  
At1g49920.1 68414.m05598 zinc finger protein-related weak simila...    27   8.2  

>At1g79830.1 68414.m09326 expressed protein weak similarity to TATA
           element modulatory factor (TMF) (Swiss-Prot:P82094)
           [Homo sapiens]
          Length = 927

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = +3

Query: 306 TATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLS--QAXSSPRSRTRNTKRW 479
           T  ++L EA   A  +E   +++  R +    R+ +LEAQLS  +A     S++   +R 
Sbjct: 647 TLNSRLQEAESKAATAEERERSVNERLSQTLSRINVLEAQLSCLRAEQGQLSKSLEKERQ 706

Query: 480 RAS 488
           RA+
Sbjct: 707 RAA 709


>At5g01220.1 68418.m00027 UDP-sulfoquinovose:DAG
           sulfoquinovosyltransferase / sulfolipid synthase (SQD2)
           identical to GI:20302857
          Length = 510

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -2

Query: 199 ATVCGTPRTRPYIFHXPLSF--*RIFFFKTSKIVPC 98
           AT C  PR+  ++ H PLSF   R+   K SK+  C
Sbjct: 28  ATSCSPPRSSSFVLHSPLSFGHRRLPISKKSKLRFC 63


>At5g38880.1 68418.m04702 expressed protein 
          Length = 796

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 181 EYHKRLQVEIMRREEAESEVAALNRV 258
           EYHKRLQV + +  +A+  V + N V
Sbjct: 195 EYHKRLQVYVNQANDAQRSVNSSNEV 220


>At5g62460.1 68418.m07838 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 307

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +3

Query: 306 TATAKLSEASQAADESERIRKALENRTNMEDDRVAILEAQLSQAXSSPRSRTRNTKRW 479
           T   + +E     DE E + +++E R   E+D V  LE+  S + S   +  +  +RW
Sbjct: 54  TEEEETTEQRDVDDEEEPLIQSVECRICQEEDSVKNLESPCSCSGSLKYAHRKCVQRW 111


>At5g52470.1 68418.m06510 fibrillarin 1 (FBR1) (FIB1) (SKIP7)
           identical to fibrillarin 1 GI:9965653 from [Arabidopsis
           thaliana]; C-terminus identical to SKP1 interacting
           partner 7 GI:10716959 from [Arabidopsis thaliana];
           contains Pfam domain PF01269: Fibrillarin
          Length = 308

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
 Frame = +2

Query: 269 GGGPREVRGAS--RDRHRQAVRGQ--PGRR*IRANTQGAGEPHQHGG 397
           GGG    RG S  R R R A RG+  P R  ++  ++   EPH+H G
Sbjct: 32  GGGRSGDRGRSGPRGRGRGAPRGRGGPPRGGMKGGSKVIVEPHRHAG 78


>At2g31690.1 68415.m03868 lipase class 3 family protein similar to
           DEFECTIVE IN ANTHER DEHISCENCE1 [Arabidopsis thaliana]
           GI:16215706; contains Pfam profile PF01764: Lipase
          Length = 484

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 459 SDSSAMXSPVTVEPPRWQRDHPPCWCGSPAPC 364
           S SS++ +PV +  P      PP +C    PC
Sbjct: 48  SSSSSLLAPVILNSPVASSSPPPIYCAPKFPC 79


>At1g60730.1 68414.m06836 aldo/keto reductase family protein
           contains Pfam profile PF00248: oxidoreductase, aldo/keto
           reductase family
          Length = 345

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +2

Query: 53  FDFNTKVNQNDDKHAARNDFRRFEEENASKRKRXMENIRTSARSTTNGC 199
           F    K+ +N D +  R    RF++EN    K   E +  SA S   GC
Sbjct: 216 FASGPKLVENLDNNDVRKTLPRFQQENLDHNKILFEKV--SAMSEKKGC 262


>At3g63070.1 68416.m07084 PWWP domain-containing protein putative
            transcription factor HUA2, Arabidopsis thaliana,
            EMBL:AF116556
          Length = 1347

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = -3

Query: 420  PPRWQRDHPPCWCGSPAPCVFARIHRRPGWPR-TAWRWRSRDAPRTSRGPPP 268
            PPR    +PP   GSP P   +R+      PR     ++ R  P +   PPP
Sbjct: 1167 PPRM---NPPMHYGSPEPSYSSRVSLSKSMPRGEGSNFQHRPYPSSHPPPPP 1215


>At1g55420.1 68414.m06339 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 725

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -3

Query: 420 PPRWQRDHPPCWCGSPA-PCVFARIHRRPGWP 328
           PP + R  PPC    PA P    R  RRP +P
Sbjct: 5   PPHFSRAKPPCRLSDPAQPHKLCR-RRRPSYP 35


>At1g49920.1 68414.m05598 zinc finger protein-related weak
           similarity to mudrA [Zea mays] GI:540581, MURAZC [Zea
           mays] GI:1857256; contains Pfam profiles PF03108: MuDR
           family transposase, PF04434: SWIM zinc finger
          Length = 785

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 124 RRKCVKTKEXXGKYKDECEEYHKRLQVEIMRREE 225
           R+KC+  +     Y  ECE +H +  +   RREE
Sbjct: 204 RQKCLLRETEKDVYVVECERWHCKWSICASRREE 237


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,578,255
Number of Sequences: 28952
Number of extensions: 230539
Number of successful extensions: 744
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)