Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060297.seq
(688 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 121 1e-28
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 121 1e-28
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 93 5e-20
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 60 3e-10
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 46 5e-06
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 46 7e-06
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 43 4e-05
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 34 0.022
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 34 0.022
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 34 0.022
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 30 0.27
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 1.9
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 27 2.5
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac... 27 2.5
SPAC3H1.14 ||SPAC9G1.01|cytoplasmic vesicle protein, Vid24 famil... 27 3.4
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 26 4.4
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe... 26 5.9
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 25 7.8
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar... 25 7.8
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 25 7.8
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 121 bits (291), Expect = 1e-28
Identities = 68/144 (47%), Positives = 90/144 (62%)
Frame = +1
Query: 256 ETRFTDTRKDEQDRCITIKSTAISMFFELEEKDLVFITNPDQRXKSEKGFLINLIDSPXH 435
+ RF DTR DEQ+R +TIKSTAIS+F E+ + D+ + P FL+NLIDSP H
Sbjct: 53 DARFMDTRADEQERGVTIKSTAISLFAEMTDDDMKDMKEP----ADGTDFLVNLIDSPGH 108
Query: 436 VDFSSEVTAALRVTDXXXXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMGPWLFLSS 615
VDFSSEVTAALRVTD QTETVLRQA+ ERI+P++ +NK+ L L
Sbjct: 109 VDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIRPVVVVNKVDRAL-LEL 167
Query: 616 NLKLKNYTRRSSVFXENVNVIIAT 687
+ + + + E+VNV+I+T
Sbjct: 168 QISQEELYQNFARVVESVNVVIST 191
Score = 79.8 bits (188), Expect = 3e-16
Identities = 37/51 (72%), Positives = 43/51 (84%)
Frame = +2
Query: 101 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARA 253
MV FT +E+R +M K N+RNMSVIAHVDHGKSTLTDSLV KAGII+ A+A
Sbjct: 1 MVAFTPEEVRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKA 51
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 121 bits (291), Expect = 1e-28
Identities = 68/144 (47%), Positives = 90/144 (62%)
Frame = +1
Query: 256 ETRFTDTRKDEQDRCITIKSTAISMFFELEEKDLVFITNPDQRXKSEKGFLINLIDSPXH 435
+ RF DTR DEQ+R +TIKSTAIS+F E+ + D+ + P FL+NLIDSP H
Sbjct: 53 DARFMDTRADEQERGVTIKSTAISLFAEMTDDDMKDMKEP----ADGTDFLVNLIDSPGH 108
Query: 436 VDFSSEVTAALRVTDXXXXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMGPWLFLSS 615
VDFSSEVTAALRVTD QTETVLRQA+ ERI+P++ +NK+ L L
Sbjct: 109 VDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIRPVVVVNKVDRAL-LEL 167
Query: 616 NLKLKNYTRRSSVFXENVNVIIAT 687
+ + + + E+VNV+I+T
Sbjct: 168 QISQEELYQNFARVVESVNVVIST 191
Score = 79.8 bits (188), Expect = 3e-16
Identities = 37/51 (72%), Positives = 43/51 (84%)
Frame = +2
Query: 101 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARA 253
MV FT +E+R +M K N+RNMSVIAHVDHGKSTLTDSLV KAGII+ A+A
Sbjct: 1 MVAFTPEEVRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKA 51
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 92.7 bits (220), Expect = 5e-20
Identities = 64/144 (44%), Positives = 83/144 (57%), Gaps = 2/144 (1%)
Frame = +1
Query: 262 RFTDTRKDEQDRCITIKSTAISMFFELEEKDLVFITNPDQRXKSEKGFLINLIDSPXHVD 441
RF D R+DE R IT+KS+AIS+FF++ I+ D++ + EK +LINLIDSP HVD
Sbjct: 55 RFLDFREDEITRGITMKSSAISLFFKV-------ISQNDEK-RVEKDYLINLIDSPGHVD 106
Query: 442 FSSEVTAALRVTDXXXXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMGPWLFLSSNL 621
FSSEV++A R+ D QT TVLRQA +RIK IL +NKM L + L
Sbjct: 107 FSSEVSSASRLCDGAFVLVDAVEGVCSQTITVLRQAWIDRIKVILVINKMDR---LITEL 163
Query: 622 KLKNYTRRSSV--FXENVNVIIAT 687
KL + E VN +I T
Sbjct: 164 KLSPIEAHYHLLRLVEQVNAVIGT 187
Score = 48.4 bits (110), Expect = 1e-06
Identities = 20/45 (44%), Positives = 32/45 (71%)
Frame = +2
Query: 119 DEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARA 253
+++ + + NIRN +++AHVDHGK+TL DSL++ GII+ A
Sbjct: 7 EKLVSLQKNQENIRNFTLLAHVDHGKTTLADSLLASNGIISSKLA 51
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 60.1 bits (139), Expect = 3e-10
Identities = 43/121 (35%), Positives = 58/121 (47%), Gaps = 6/121 (4%)
Frame = +1
Query: 286 EQDRCITIKSTAISMFFELEEKDLVFITNPDQRXKSEKGFLINLIDSPXHVDFSSEVTAA 465
E+++ ITI+S A +E + N Q+ EK + IN+ID+P H+DF+ EV A
Sbjct: 108 EREKGITIQSAATHCTWERTVDQIE--ANEKQKTDFEKSYNINIIDTPGHIDFTIEVERA 165
Query: 466 LRVTDXXXXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKM-----GPWLFLSS-NLKL 627
LRV D QT TV RQ + I F+NKM PW + N KL
Sbjct: 166 LRVLDGAVLVLCAVSGVQSQTITVDRQMRRYNVPRISFVNKMDRMGADPWKVIQQINTKL 225
Query: 628 K 630
K
Sbjct: 226 K 226
Score = 35.1 bits (77), Expect = 0.010
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +2
Query: 107 NFTVDEIRGMMDKKR--NIRNMSVIAHVDHGKSTLTDSLVSKAGII 238
N + E DKKR IRN+ + AH+D GK+T T+ ++ G I
Sbjct: 41 NLNIQEQLNDNDKKRLKQIRNIGISAHIDSGKTTFTERVLYYTGRI 86
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 46.0 bits (104), Expect = 5e-06
Identities = 31/113 (27%), Positives = 52/113 (46%)
Frame = +1
Query: 253 RETRFTDTRKDEQDRCITIKSTAISMFFELEEKDLVFITNPDQRXKSEKGFLINLIDSPX 432
R R+TDT E++R ++IKST +++ D + K+ F ID+P
Sbjct: 174 RSLRYTDTHYLERERVMSIKSTPLTLAVS------------DMKGKT---FAFQCIDTPG 218
Query: 433 HVDFSSEVTAALRVTDXXXXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKM 591
HVDF EV A + ++D T +++ AI + +L +NK+
Sbjct: 219 HVDFVDEVAAPMAISDGVVLVVDVIEGVMINTTRIIKHAILHDMPIVLVLNKV 271
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 45.6 bits (103), Expect = 7e-06
Identities = 23/61 (37%), Positives = 32/61 (52%)
Frame = +1
Query: 409 INLIDSPXHVDFSSEVTAALRVTDXXXXXXXXXXXXXXQTETVLRQAIAERIKPILFMNK 588
INLID+P H DF+ EV ++ V D QT+ V +QA I ++F+NK
Sbjct: 95 INLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAGVEAQTKVVWKQATKRGIPKVIFVNK 154
Query: 589 M 591
M
Sbjct: 155 M 155
Score = 34.7 bits (76), Expect = 0.013
Identities = 13/27 (48%), Positives = 21/27 (77%)
Frame = +2
Query: 152 NIRNMSVIAHVDHGKSTLTDSLVSKAG 232
+IRN+ +IAH+D GK+TLT+ ++ G
Sbjct: 27 SIRNVGIIAHIDAGKTTLTEKMLYYGG 53
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 43.2 bits (97), Expect = 4e-05
Identities = 18/38 (47%), Positives = 28/38 (73%)
Frame = +2
Query: 125 IRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGII 238
+RG+ + +RN +VIAH+DHGKSTL+D ++ G+I
Sbjct: 50 VRGIPQNR--VRNWAVIAHIDHGKSTLSDCILKLTGVI 85
Score = 35.9 bits (79), Expect = 0.005
Identities = 19/65 (29%), Positives = 32/65 (49%)
Frame = +1
Query: 397 KGFLINLIDSPXHVDFSSEVTAALRVTDXXXXXXXXXXXXXXQTETVLRQAIAERIKPIL 576
+ +L+NLID+P HVDF +EV +L + QT + A ++ + I
Sbjct: 122 QSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQGIQAQTLSNFYMAFSQNLVIIP 181
Query: 577 FMNKM 591
+NK+
Sbjct: 182 VLNKV 186
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 33.9 bits (74), Expect = 0.022
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 137 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 232
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 33.9 bits (74), Expect = 0.022
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 137 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 232
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 33.9 bits (74), Expect = 0.022
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 137 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 232
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCG 32
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 30.3 bits (65), Expect = 0.27
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +2
Query: 143 KKRNIRNMSVIAHVDHGKSTLTDSL 217
KK ++ N+ I HVDHGK+TLT ++
Sbjct: 50 KKPHV-NIGTIGHVDHGKTTLTAAI 73
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 27.5 bits (58), Expect = 1.9
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = -3
Query: 539 STVSVCTHTPAHXSTTTR-APSVTRSAAVTSEEKSTCXGESIKLIKKPFSLXSRWSGFVM 363
+T S + +P+ STTT +PS + S++ +S S+ S S S S
Sbjct: 135 TTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 194
Query: 362 NTKSFSSSSKNIEMAV 315
++ S SSSS + + +
Sbjct: 195 SSSSSSSSSSSSSVPI 210
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 27.1 bits (57), Expect = 2.5
Identities = 9/17 (52%), Positives = 15/17 (88%)
Frame = +2
Query: 164 MSVIAHVDHGKSTLTDS 214
++++ HVDHGK+TL D+
Sbjct: 174 VTLMGHVDHGKTTLLDA 190
>SPCC1393.02c |||non-specific DNA binding protein Spt2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 406
Score = 27.1 bits (57), Expect = 2.5
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Frame = +2
Query: 146 KRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAERPVSLTRVRTNKTVASPLNLR-P 322
K+ ++N S + + + AG+ AG ++ SL ++T A+P N R P
Sbjct: 155 KKPVKNSSSRDQPVRNSGATSTASLPPAGLRAGRGSQISASLAWLKTGGASAAPSNPRQP 214
Query: 323 SLCSSSLKRKI*YSSQTL 376
S+ RK Y+S L
Sbjct: 215 PPTSNFSNRKARYASNGL 232
>SPAC3H1.14 ||SPAC9G1.01|cytoplasmic vesicle protein, Vid24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 195
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 157 DIPLLVHHPTDLVYREIHHFRWFMIFVLLNQLPYASNGVRFEKG 26
DIPL + P D + RE + RW + +L + Y ++ F G
Sbjct: 102 DIPLRLIQPYDPLSRETVYMRWKELAMLDKTVDYQNHNQSFPFG 145
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 161 NMSVIAHVDHGKSTLTDSLVSKAGII 238
N+ I HVD GKSTL +++ G++
Sbjct: 240 NIVFIGHVDAGKSTLGGNILFLTGMV 265
>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 25.8 bits (54), Expect = 5.9
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = -2
Query: 606 EEPRSHFVHEQNRLDAL--GNSLTQYCFGLYTHTSTQXNNHKGSISDTEC 463
EE RS++ + R AL LT+YC G + + NH GS C
Sbjct: 337 EEFRSYYEY-MGRPSALDYAKRLTEYCGGAHIWLKREDLNHGGSHKINNC 385
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -3
Query: 539 STVSVCTHTPAHXSTTTRAPSVTRSAAVTS 450
S +V T +P H STT P T S A S
Sbjct: 297 SFTNVPTSSPLHQSTTANHPEKTPSRAAAS 326
>SPBC19F5.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -1
Query: 157 DIPLLVHHPTDLVYREIHHFRWFMIFVLLNQL 62
D P + +H D ++E H RW + +LLN++
Sbjct: 318 DNPHIHYHYFDF-HKECSHMRWDRVSLLLNEI 348
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 152 SASCPSSHGSRLP*NSPF*MVYDFCSIK 69
+ASCP SH L + PF + + C IK
Sbjct: 417 TASCPLSHSKLLLEHRPFQTLAEACIIK 444
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,534,304
Number of Sequences: 5004
Number of extensions: 47974
Number of successful extensions: 145
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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