Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060297.seq
         (688 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                   166   1e-41
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               43   2e-04
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     38   0.010
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.018
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                33   0.29 
SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10)              33   0.29 
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_18551| Best HMM Match : RNA_pol_Rpc82 (HMM E-Value=0.69)            30   2.0  
SB_8762| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.7  
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               29   4.7  
SB_58524| Best HMM Match : Ank (HMM E-Value=3.4e-16)                   28   6.2  
SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_17109| Best HMM Match : LRR_1 (HMM E-Value=2.9e-10)                 28   6.2  

>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score =  166 bits (404), Expect = 1e-41
 Identities = 90/144 (62%), Positives = 103/144 (71%)
 Frame = +1

Query: 256 ETRFTDTRKDEQDRCITIKSTAISMFFELEEKDLVFITNPDQRXKSEKGFLINLIDSPXH 435
           ETRFTDTRKDEQDRCITIKSTAIS+++EL E D  +IT P  +   E+GFLINLIDSP H
Sbjct: 52  ETRFTDTRKDEQDRCITIKSTAISLYYELPESDFEYITQP--KDPKERGFLINLIDSPGH 109

Query: 436 VDFSSEVTAALRVTDXXXXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMGPWLFLSS 615
           VDFSSEVTAALRVTD              QTETVLRQAIAERIKP+LFMNKM   L L  
Sbjct: 110 VDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRAL-LEL 168

Query: 616 NLKLKNYTRRSSVFXENVNVIIAT 687
            L  ++  +  +   E++NVIIAT
Sbjct: 169 QLDQEDLYQTFARIVESINVIIAT 192



 Score = 92.7 bits (220), Expect = 3e-19
 Identities = 44/50 (88%), Positives = 47/50 (94%)
 Frame = +2

Query: 104 VNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARA 253
           VNFT D+IRG+MDKK NIRNMSVIAHVDHGKSTLTDSLVSKAGIIA A+A
Sbjct: 1   VNFTTDQIRGIMDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAAAKA 50


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 18/37 (48%), Positives = 25/37 (67%)
 Frame = +2

Query: 155  IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAERPV 265
            +RN S++AHVDHGKSTL D L+   G I+ +   + V
Sbjct: 1941 VRNFSIVAHVDHGKSTLADRLLEVTGTISKSSDNKQV 1977


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 25/95 (26%), Positives = 40/95 (42%)
 Frame = +1

Query: 307 IKSTAISMFFELEEKDLVFITNPDQRXKSEKGFLINLIDSPXHVDFSSEVTAALRVTDXX 486
           IK  A S F E+E +  + +        + +   IN++D+P H DF+ +    L   D  
Sbjct: 48  IKKGATSDFMEIERQRGISVATSVLAF-NYRDKKINILDTPGHKDFAEDTFRTLTAVDSV 106

Query: 487 XXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKM 591
                       QTE ++       I  I+F+NKM
Sbjct: 107 IVVIDVAKGVEEQTEKLVEVCRMRNIPMIVFINKM 141



 Score = 31.1 bits (67), Expect = 0.87
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +2

Query: 140 DKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAERPVSLTRVRTN 289
           D+ +  R   +I+H D GK+TLT+ L+   G I  A A +   + +  T+
Sbjct: 5   DEIKRRRTFGIISHPDAGKTTLTEKLLLFGGAIQEAGAVKSNKIKKGATS 54


>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score = 36.7 bits (81), Expect = 0.018
 Identities = 21/85 (24%), Positives = 39/85 (45%)
 Frame = +2

Query: 101 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAERPVSLTRV 280
           + N+ ++ +  +MD    IRN+++  H+  GK+   D L  +      A+  + V L   
Sbjct: 112 LTNYNIEYLADLMDNPELIRNVALAGHLHSGKTAFLDCLFEQTHPELEAKEGKEVMLNTE 171

Query: 281 RTNKTVASPLNLRPSLCSSSLKRKI 355
           R  K      NL  ++C + + R I
Sbjct: 172 RLLKHAVQE-NLAITICINKIDRLI 195


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +2

Query: 137 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 232
           M K++   N+ VI HVD GKST T  L+ K G
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCG 32


>SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10)
          Length = 563

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +1

Query: 445 SSEVTAALRVTDXXXXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKM 591
           + +V+ A+R+ D              QT  VLRQA  E I+P L +NK+
Sbjct: 21  AGKVSTAVRLCDGALVVVDVVEGVSPQTHVVLRQAWLENIRPCLVLNKI 69



 Score = 32.7 bits (71), Expect = 0.29
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +1

Query: 451 EVTAALRVTDXXXXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKM 591
           +V+ A+R+ D              QT  VLRQA  E I+P L +NK+
Sbjct: 93  QVSTAVRLCDGALVVVDVVEGVSPQTHVVLRQAWLENIRPCLVLNKI 139


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/68 (27%), Positives = 28/68 (41%)
 Frame = +1

Query: 388 KSEKGFLINLIDSPXHVDFSSEVTAALRVTDXXXXXXXXXXXXXXQTETVLRQAIAERIK 567
           K   G  I  ID+P H  F+S       VTD              QT   +R A+  ++ 
Sbjct: 71  KLPSGEKITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGVKTQTVESIRHAMHAKVP 130

Query: 568 PILFMNKM 591
            I+ +NK+
Sbjct: 131 LIVAINKI 138



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = +2

Query: 164 MSVIAHVDHGKSTLTDSLVSKAGIIAG 244
           ++++ HVDHGK+TL D+L   + + AG
Sbjct: 31  VTIMGHVDHGKTTLLDAL-RNSSVAAG 56


>SB_18551| Best HMM Match : RNA_pol_Rpc82 (HMM E-Value=0.69)
          Length = 348

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/84 (22%), Positives = 40/84 (47%)
 Frame = +2

Query: 128 RGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAERPVSLTRVRTNKTVASP 307
           R ++DK+  I +M V    +HG     D++     ++  A  E  + L   +  ++ A+ 
Sbjct: 204 RRLLDKQERIDSMIVNLKAEHGGEAAADAISDLQELVTPAEREMLMKLKITQARQSGANN 263

Query: 308 LNLRPSLCSSSLKRKI*YSSQTLT 379
            N+     ++ L++KI  +S+  T
Sbjct: 264 TNIELIGKTNLLQKKIKIASEVGT 287


>SB_8762| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 6/106 (5%)
 Frame = +1

Query: 100 NGEFHGRRDPWDDG-----QEAEYPQHVCDRPRRSRQVNPHGLVGFQGRYHCWCESRETR 264
           +G ++ +R P D       QE E P    +  RR   V+P   V      +C    RET 
Sbjct: 533 SGLYNNQRSPLDGSPSYPHQEIESPVDATEASRRCIDVHPRSGVSHLAENNCSSLERET- 591

Query: 265 FTDTRKDEQDRCIT-IKSTAISMFFELEEKDLVFITNPDQRXKSEK 399
             D+   + DR +  IK  AI    E +    + +    +  K+EK
Sbjct: 592 -ADSTFQQNDRVVNLIKVDAIDDAEEAKRLFDLLLARKARHEKTEK 636


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +2

Query: 164 MSVIAHVDHGKSTLTDSLVSKAGIIAG 244
           ++V+ HVDHGK++L D  +  A +I G
Sbjct: 94  VTVMGHVDHGKTSLLD-YIRNANVIEG 119


>SB_58524| Best HMM Match : Ank (HMM E-Value=3.4e-16)
          Length = 1003

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/68 (26%), Positives = 33/68 (48%)
 Frame = +2

Query: 152 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAERPVSLTRVRTNKTVASPLNLRPSLC 331
           N R +S  +  + G  +L+ SL S+   +A  R ERP+ +       ++     +RP + 
Sbjct: 471 NSRRLSKGSQTNGGALSLSGSLRSRRQSVAVMRGERPLDMASKWRKGSIIMATTIRPEV- 529

Query: 332 SSSLKRKI 355
             SL+R +
Sbjct: 530 -ESLRRSM 536


>SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1864

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
 Frame = -3

Query: 521 THTPAHXSTTTRAPSVTRSAAVTSEEKSTCXGESIKL---IKKPFSLXSRWSGFVMNTKS 351
           TH+P+   TTT AP+         E    C G+ ++L     K  +L  R+ G       
Sbjct: 612 THSPSSTPTTTGAPTTAGFNEFNLEASEDCTGDYVELRDGDSKSAALIGRYCGTNAPMML 671

Query: 350 FSSSSK 333
             SS K
Sbjct: 672 MGSSDK 677


>SB_17109| Best HMM Match : LRR_1 (HMM E-Value=2.9e-10)
          Length = 390

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 10/101 (9%)
 Frame = -2

Query: 525 LYTHTSTQXNNHKGSISDTE----CSCYFRREINVSR*V----NQVDQETFLTLX-TLVR 373
           L  HTS     HK SIS+      CS     E +V   +    N ++QE  +TL  +L+ 
Sbjct: 154 LVDHTSVDIKVHKLSISELHRSKLCSLVSLLEADVINTLHCPFNSLEQEGVVTLCRSLIT 213

Query: 372 VCDEY*IFL-FKLEEHRDGRRFNGDATVLFVLTRVSETGLS 253
             +   + L + L +HRD    +G A+   +LT + +  LS
Sbjct: 214 FTNLTDLNLAYNLIKHRDLEAIDGLASTFSILTNLKKLDLS 254


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,416,079
Number of Sequences: 59808
Number of extensions: 377932
Number of successful extensions: 1085
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)