Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060297.seq
         (688 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    28   0.24 
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            27   0.73 
AB090822-1|BAC57919.1|  468|Anopheles gambiae gag-like protein p...    26   0.97 
AJ549085-1|CAD70159.1|  529|Anopheles gambiae thioredoxin-disulf...    25   1.7  
AJ549084-1|CAD70158.1|  505|Anopheles gambiae thioredoxin-disulf...    25   1.7  
AJ459821-1|CAD30858.1|  502|Anopheles gambiae thioredoxin reduct...    25   1.7  
CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    24   5.2  
AJ007394-1|CAA07489.1|  112|Anopheles gambiae mucin protein.           24   5.2  
AF046924-1|AAC08530.1|  122|Anopheles gambiae mucin protein.           24   5.2  

>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 28.3 bits (60), Expect = 0.24
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +1

Query: 136 DGQEAEYPQHVCDRPRRSRQVNPHGLVGFQGRYHCWCESRETRFT 270
           D   A   QH+  RP+RS + NP       GR H  C+SR  + T
Sbjct: 273 DENPAGAQQHLSHRPQRSTRKNP------AGRQHDRCDSRRWKTT 311


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 26.6 bits (56), Expect = 0.73
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -3

Query: 422 SIKLIKKPFSLXSRWSGFVMNTKSFSSSSKNIEMAVDL 309
           +++L+KKP SL S W       +       N ++A+ L
Sbjct: 156 TVRLLKKPPSLDSEWKSSTSTIQLIEQLDSNKQLAIAL 193


>AB090822-1|BAC57919.1|  468|Anopheles gambiae gag-like protein
           protein.
          Length = 468

 Score = 26.2 bits (55), Expect = 0.97
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = -3

Query: 578 NRIGLMRSAIA*RSTVSVCTHTPAHXSTTTRAPSVTRSA 462
           N +GL RS  A  S  SV    PA    T RAP    +A
Sbjct: 3   NALGLTRSMSADTSKTSVGKQLPASGIPTLRAPMAAGNA 41


>AJ549085-1|CAD70159.1|  529|Anopheles gambiae thioredoxin-disulfide
           reductase protein.
          Length = 529

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -2

Query: 297 TVLFVLTRVSETGLSALAPAMIPALETNESVRVDL 193
           TVLF + R +ETG   LA A +   E  +S ++++
Sbjct: 313 TVLFAIGRQAETGTLKLANAGVVTAEGGKSDKLEV 347


>AJ549084-1|CAD70158.1|  505|Anopheles gambiae thioredoxin-disulfide
           reductase protein.
          Length = 505

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -2

Query: 297 TVLFVLTRVSETGLSALAPAMIPALETNESVRVDL 193
           TVLF + R +ETG   LA A +   E  +S ++++
Sbjct: 289 TVLFAIGRQAETGTLKLANAGVVTAEGGKSDKLEV 323


>AJ459821-1|CAD30858.1|  502|Anopheles gambiae thioredoxin reductase
           protein.
          Length = 502

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -2

Query: 297 TVLFVLTRVSETGLSALAPAMIPALETNESVRVDL 193
           TVLF + R +ETG   LA A +   E  +S ++++
Sbjct: 286 TVLFAIGRQAETGTLKLANAGVVTAEGGKSDKLEV 320


>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
           polyprotein protein.
          Length = 1726

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 151 EYPQHVCDRPRRSRQVNPHGLVGFQGR-YHCWCESRETR 264
           ++P HVC+R  R+  +N   +V   G  ++C  +    R
Sbjct: 350 QHPLHVCERFERASVINREEIVRKHGLCFNCLRKGHSAR 388


>AJ007394-1|CAA07489.1|  112|Anopheles gambiae mucin protein.
          Length = 112

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 539 STVSVCTHTPAHXSTTTRAPSVTRSAA 459
           +TV+  T T A  +TTT AP+ T + A
Sbjct: 34  TTVAPTTTTVAPTTTTTVAPTTTTTVA 60


>AF046924-1|AAC08530.1|  122|Anopheles gambiae mucin protein.
          Length = 122

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 539 STVSVCTHTPAHXSTTTRAPSVTRSAA 459
           +TV+  T T A  +TTT AP+ T + A
Sbjct: 34  TTVAPTTTTVAPTTTTTVAPTTTTTVA 60


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 646,622
Number of Sequences: 2352
Number of extensions: 12098
Number of successful extensions: 28
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 69413730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)