Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060297.seq
(688 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 164 6e-41
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 161 4e-40
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 61 6e-10
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 61 6e-10
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 58 8e-09
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 58 8e-09
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 48 5e-06
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 48 6e-06
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 44 1e-04
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 33 0.25
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 33 0.25
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 33 0.25
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 33 0.25
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 33 0.25
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 32 0.33
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 32 0.33
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 32 0.33
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 30 1.3
AL031627-6|CAA20958.1| 338|Caenorhabditis elegans Hypothetical ... 30 1.3
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 30 1.3
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 29 2.4
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter... 29 2.4
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 29 3.1
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 29 3.1
Z83225-2|CAB05722.1| 732|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z81097-19|CAB03177.1| 732|Caenorhabditis elegans Hypothetical p... 29 4.1
U41027-7|AAP46276.1| 1465|Caenorhabditis elegans Hypothetical pr... 29 4.1
U41027-6|AAC48194.5| 1512|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z81041-2|CAB02787.4| 1403|Caenorhabditis elegans Hypothetical pr... 27 9.5
AL009246-7|CAA15840.2| 347|Caenorhabditis elegans Hypothetical ... 27 9.5
AF000264-4|AAC71125.3| 631|Caenorhabditis elegans Hypothetical ... 27 9.5
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 164 bits (398), Expect = 6e-41
Identities = 95/152 (62%), Positives = 104/152 (68%), Gaps = 8/152 (5%)
Frame = +1
Query: 256 ETRFTDTRKDEQDRCITIKSTAISMFFELEEKDLVFITNPDQ------RXKSEK--GFLI 411
ETRFTDTRKDEQ+RCITIKSTAIS+FFELE+KDL F+ +Q K EK GFLI
Sbjct: 53 ETRFTDTRKDEQERCITIKSTAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLI 112
Query: 412 NLIDSPXHVDFSSEVTAALRVTDXXXXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKM 591
NLIDSP HVDFSSEVTAALRVTD QTETVLRQAIAERIKP+LFMNKM
Sbjct: 113 NLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKM 172
Query: 592 GPWLFLSSNLKLKNYTRRSSVFXENVNVIIAT 687
L L L + + EN+NVIIAT
Sbjct: 173 DRAL-LELQLGAEELFQTFQRIVENINVIIAT 203
Score = 98.3 bits (234), Expect = 4e-21
Identities = 46/51 (90%), Positives = 50/51 (98%)
Frame = +2
Query: 101 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARA 253
MVNFTVDEIR +MD+KRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAG++A
Sbjct: 1 MVNFTVDEIRALMDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKA 51
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 161 bits (391), Expect = 4e-40
Identities = 94/152 (61%), Positives = 103/152 (67%), Gaps = 8/152 (5%)
Frame = +1
Query: 256 ETRFTDTRKDEQDRCITIKSTAISMFFELEEKDLVFITNPDQ------RXKSEK--GFLI 411
ETRFTDTRKDEQ+RCITIKSTAIS+FFELE+KDL F+ +Q K EK GFLI
Sbjct: 53 ETRFTDTRKDEQERCITIKSTAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLI 112
Query: 412 NLIDSPXHVDFSSEVTAALRVTDXXXXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKM 591
NLIDSP HVDFSSEVTAAL VTD QTETVLRQAIAERIKP+LFMNKM
Sbjct: 113 NLIDSPGHVDFSSEVTAALGVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKM 172
Query: 592 GPWLFLSSNLKLKNYTRRSSVFXENVNVIIAT 687
L L L + + EN+NVIIAT
Sbjct: 173 DRAL-LELQLGAEELFQTFQRIVENINVIIAT 203
Score = 98.3 bits (234), Expect = 4e-21
Identities = 46/51 (90%), Positives = 50/51 (98%)
Frame = +2
Query: 101 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARA 253
MVNFTVDEIR +MD+KRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAG++A
Sbjct: 1 MVNFTVDEIRALMDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKA 51
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 61.3 bits (142), Expect = 6e-10
Identities = 43/110 (39%), Positives = 56/110 (50%)
Frame = +1
Query: 262 RFTDTRKDEQDRCITIKSTAISMFFELEEKDLVFITNPDQRXKSEKGFLINLIDSPXHVD 441
R+ D+R+DEQ R IT+KS+ IS+ E LINLIDSP HVD
Sbjct: 56 RYMDSREDEQTRGITMKSSGISLLCE--------------------PLLINLIDSPGHVD 95
Query: 442 FSSEVTAALRVTDXXXXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKM 591
FS EVT+AL ++D QTE ++RQ I IL +NK+
Sbjct: 96 FSGEVTSALILSDIALLLIDVIEGICSQTEALIRQVIRNGQAMILVINKI 145
Score = 41.1 bits (92), Expect = 7e-04
Identities = 17/34 (50%), Positives = 25/34 (73%)
Frame = +2
Query: 152 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARA 253
+IRN+ ++AHVDHGK++ DSLVS +I+ A
Sbjct: 19 HIRNVCLVAHVDHGKTSFADSLVSANAVISSRMA 52
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 61.3 bits (142), Expect = 6e-10
Identities = 43/110 (39%), Positives = 56/110 (50%)
Frame = +1
Query: 262 RFTDTRKDEQDRCITIKSTAISMFFELEEKDLVFITNPDQRXKSEKGFLINLIDSPXHVD 441
R+ D+R+DEQ R IT+KS+ IS+ E LINLIDSP HVD
Sbjct: 56 RYMDSREDEQTRGITMKSSGISLLCE--------------------PLLINLIDSPGHVD 95
Query: 442 FSSEVTAALRVTDXXXXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKM 591
FS EVT+AL ++D QTE ++RQ I IL +NK+
Sbjct: 96 FSGEVTSALILSDIALLLIDVIEGICSQTEALIRQVIRNGQAMILVINKI 145
Score = 41.1 bits (92), Expect = 7e-04
Identities = 17/34 (50%), Positives = 25/34 (73%)
Frame = +2
Query: 152 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARA 253
+IRN+ ++AHVDHGK++ DSLVS +I+ A
Sbjct: 19 HIRNVCLVAHVDHGKTSFADSLVSANAVISSRMA 52
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 57.6 bits (133), Expect = 8e-09
Identities = 46/147 (31%), Positives = 69/147 (46%)
Frame = +1
Query: 247 ESRETRFTDTRKDEQDRCITIKSTAISMFFELEEKDLVFITNPDQRXKSEKGFLINLIDS 426
E + RFTD E+ R +IKS +S I D R KS +L+N+ID+
Sbjct: 164 EDADARFTDILFIEKQRGCSIKSQPVS------------IVAQDSRSKS---YLLNIIDT 208
Query: 427 PXHVDFSSEVTAALRVTDXXXXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMGPWLF 606
P HV+FS E+TA+ R+ D TE +R AI ER+ L ++K+ L
Sbjct: 209 PGHVNFSDEMTASYRLADGVVVMVDAHEGVMMNTERAIRHAIQERLAVTLCISKIDR-LL 267
Query: 607 LSSNLKLKNYTRRSSVFXENVNVIIAT 687
L L + + + + VN I++T
Sbjct: 268 LELKLPPADAYFKLRLIIDQVNNILST 294
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +2
Query: 134 MMDKKRNIRNMSVIAHVDHGKSTLTDSLVSK 226
+MD +RN+++ H+ HGK+T D L+ +
Sbjct: 125 LMDCPHIMRNVAIAGHLHHGKTTFLDCLMEQ 155
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 57.6 bits (133), Expect = 8e-09
Identities = 46/147 (31%), Positives = 69/147 (46%)
Frame = +1
Query: 247 ESRETRFTDTRKDEQDRCITIKSTAISMFFELEEKDLVFITNPDQRXKSEKGFLINLIDS 426
E + RFTD E+ R +IKS +S I D R KS +L+N+ID+
Sbjct: 39 EDADARFTDILFIEKQRGCSIKSQPVS------------IVAQDSRSKS---YLLNIIDT 83
Query: 427 PXHVDFSSEVTAALRVTDXXXXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMGPWLF 606
P HV+FS E+TA+ R+ D TE +R AI ER+ L ++K+ L
Sbjct: 84 PGHVNFSDEMTASYRLADGVVVMVDAHEGVMMNTERAIRHAIQERLAVTLCISKIDR-LL 142
Query: 607 LSSNLKLKNYTRRSSVFXENVNVIIAT 687
L L + + + + VN I++T
Sbjct: 143 LELKLPPADAYFKLRLIIDQVNNILST 169
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 137 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSK 226
MD +RN+++ H+ HGK+T D L+ +
Sbjct: 1 MDCPHIMRNVAIAGHLHHGKTTFLDCLMEQ 30
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 48.4 bits (110), Expect = 5e-06
Identities = 28/64 (43%), Positives = 33/64 (51%)
Frame = +1
Query: 400 GFLINLIDSPXHVDFSSEVTAALRVTDXXXXXXXXXXXXXXQTETVLRQAIAERIKPILF 579
G IN+ID+P HVDF+ EV ALRV D QT TV RQ + I F
Sbjct: 111 GTNINIIDTPGHVDFTVEVERALRVLDGAVLVLCGVGGVQSQTFTVNRQLARYNVPFICF 170
Query: 580 MNKM 591
+NKM
Sbjct: 171 VNKM 174
Score = 32.7 bits (71), Expect = 0.25
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +2
Query: 155 IRNMSVIAHVDHGKSTLTDSLVSKAGII 238
IRN+ + AH+D GK+T+T+ ++ AG I
Sbjct: 44 IRNIGISAHIDSGKTTVTERILYYAGRI 71
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 48.0 bits (109), Expect = 6e-06
Identities = 27/65 (41%), Positives = 33/65 (50%)
Frame = +1
Query: 397 KGFLINLIDSPXHVDFSSEVTAALRVTDXXXXXXXXXXXXXXQTETVLRQAIAERIKPIL 576
KG INLID+P HVDF EV +RV D QT TV RQ+ ++
Sbjct: 88 KGHRINLIDTPGHVDFRVEVERCVRVLDGIVVVIDGSAGVQPQTLTVWRQSSKFKLPAHF 147
Query: 577 FMNKM 591
F+NKM
Sbjct: 148 FINKM 152
Score = 36.3 bits (80), Expect = 0.021
Identities = 16/28 (57%), Positives = 22/28 (78%)
Frame = +2
Query: 155 IRNMSVIAHVDHGKSTLTDSLVSKAGII 238
+RN+ VIAHVD GK+T+T+ L+ AG I
Sbjct: 25 LRNIGVIAHVDAGKTTVTERLLYLAGAI 52
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 44.0 bits (99), Expect = 1e-04
Identities = 24/65 (36%), Positives = 35/65 (53%)
Frame = +1
Query: 397 KGFLINLIDSPXHVDFSSEVTAALRVTDXXXXXXXXXXXXXXQTETVLRQAIAERIKPIL 576
+G+L+NLID+P HVDFS+EV+ +L V D QT A + I+ I
Sbjct: 100 RGYLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQGVQAQTIANFWLAFEKNIQIIP 159
Query: 577 FMNKM 591
+NK+
Sbjct: 160 VINKI 164
Score = 41.1 bits (92), Expect = 7e-04
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +2
Query: 155 IRNMSVIAHVDHGKSTLTDSLVSKAGII 238
IRN ++AHVDHGKSTL D L+ G +
Sbjct: 42 IRNFGIVAHVDHGKSTLADRLLEMCGAV 69
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 32.7 bits (71), Expect = 0.25
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 137 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 232
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 32.7 bits (71), Expect = 0.25
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 137 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 232
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 32.7 bits (71), Expect = 0.25
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 137 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 232
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 32.7 bits (71), Expect = 0.25
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 137 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 232
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 32.7 bits (71), Expect = 0.25
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 137 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 232
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 161 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAR 250
N+ I HVDHGK+TLT ++ GA+
Sbjct: 51 NVGTIGHVDHGKTTLTSAITKILATSKGAK 80
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 161 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAR 250
N+ I HVDHGK+TLT ++ GA+
Sbjct: 52 NVGTIGHVDHGKTTLTSAITKILATSKGAK 81
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 161 NMSVIAHVDHGKSTLTDSLVSKAGIIAGAR 250
N+ I HVDHGK+TLT ++ GA+
Sbjct: 52 NVGTIGHVDHGKTTLTSAITKILATSKGAK 81
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 161 NMSVIAHVDHGKSTLTDSL 217
N+ I H+DHGK+TLT ++
Sbjct: 47 NVGTIGHIDHGKTTLTSAI 65
>AL031627-6|CAA20958.1| 338|Caenorhabditis elegans Hypothetical
protein Y102A5C.15 protein.
Length = 338
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = -3
Query: 422 SIKLIKKPFSLXSRWSGFVMNTKSFSSSSKNIEMAVDLMVMQ 297
S+ L+ PF L +R +G+ + FSS S + MAV ++ +Q
Sbjct: 68 SVTLLGIPFILATRLAGYSLGLLKFSSYSFLVTMAVSVLSLQ 109
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 161 NMSVIAHVDHGKSTLTDSL 217
N+ I H+DHGK+TLT ++
Sbjct: 47 NVGTIGHIDHGKTTLTSAI 65
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +2
Query: 140 DKKRNIRNMSVIAHVDHGKSTLTDSL 217
D +R ++++ HVDHGK+TL D++
Sbjct: 151 DLERRPPIVTIMGHVDHGKTTLLDAM 176
>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 6 protein.
Length = 1254
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/68 (25%), Positives = 27/68 (39%)
Frame = -3
Query: 557 SAIA*RSTVSVCTHTPAHXSTTTRAPSVTRSAAVTSEEKSTCXGESIKLIKKPFSLXSRW 378
+AI ++ + T STT+ P +T + + +E T S+ P L RW
Sbjct: 691 TAIFAEASTGIITTDEETTSTTSTTPEITSTKEIVTESAITQTSVSVVESSTPRQLPERW 750
Query: 377 SGFVMNTK 354
V K
Sbjct: 751 KAIVNKFK 758
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -3
Query: 188 DRRGRSQTCCGYSASCPSSHG 126
DRRGR TC G CP G
Sbjct: 61 DRRGRCMTCAGNLTDCPGHFG 81
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein (
C.elegans RNA polymeraseII largest subunit (ama-1 IV)
gene, complete cds. ).
Length = 1859
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -3
Query: 188 DRRGRSQTCCGYSASCPSSHG 126
DRRGR TC G CP G
Sbjct: 61 DRRGRCMTCAGNLTDCPGHFG 81
>Z83225-2|CAB05722.1| 732|Caenorhabditis elegans Hypothetical
protein F42H11.2 protein.
Length = 732
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 103 GEFHGRRDPWDDGQEAEYPQHVCDR 177
GEFHG WD+ ++EY + DR
Sbjct: 666 GEFHGTTKSWDNITKSEYGTFLLDR 690
>Z81097-19|CAB03177.1| 732|Caenorhabditis elegans Hypothetical
protein F42H11.2 protein.
Length = 732
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 103 GEFHGRRDPWDDGQEAEYPQHVCDR 177
GEFHG WD+ ++EY + DR
Sbjct: 666 GEFHGTTKSWDNITKSEYGTFLLDR 690
>U41027-7|AAP46276.1| 1465|Caenorhabditis elegans Hypothetical protein
R08E3.1b protein.
Length = 1465
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = -3
Query: 539 STVSVCTHTPAHXSTTTRAPSVTRSAAVTS 450
STVSV T T ST+T APS ++S V++
Sbjct: 1044 STVSVITSTTMLPSTSTVAPSTSQSTIVST 1073
>U41027-6|AAC48194.5| 1512|Caenorhabditis elegans Hypothetical protein
R08E3.1a protein.
Length = 1512
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = -3
Query: 539 STVSVCTHTPAHXSTTTRAPSVTRSAAVTS 450
STVSV T T ST+T APS ++S V++
Sbjct: 1044 STVSVITSTTMLPSTSTVAPSTSQSTIVST 1073
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 149 RNIRNMSVIAHVDHGKSTLTDSLVSKAGII 238
+++ N+ V+ HVD GKSTL L+ ++
Sbjct: 168 KDLINLIVVGHVDAGKSTLMGHLLHDLEVV 197
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 149 RNIRNMSVIAHVDHGKSTLTDSLVSKAGII 238
+++ N+ V+ HVD GKSTL L+ ++
Sbjct: 186 KDLINLIVVGHVDAGKSTLMGHLLHDLEVV 215
>Z81041-2|CAB02787.4| 1403|Caenorhabditis elegans Hypothetical protein
C27A7.4 protein.
Length = 1403
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 453 FRREINVSR*VNQVDQETFLTLXTLVRVCDE 361
+R + + V VD ETF+ TL +VCDE
Sbjct: 1340 YRAITGLQKKVPNVDLETFVETSTLDKVCDE 1370
>AL009246-7|CAA15840.2| 347|Caenorhabditis elegans Hypothetical
protein C47F8.8 protein.
Length = 347
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 516 HTSTQXNNHKGSISDTECSCYFRREINV 433
H + H G IS T C+ +FRR I +
Sbjct: 15 HNTETTRRHFGIISCTACAAFFRRSIGM 42
>AF000264-4|AAC71125.3| 631|Caenorhabditis elegans Hypothetical
protein F43E2.3 protein.
Length = 631
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 500 STTTRAPSVTRSAAVTSEEKSTCXGESIK 414
+T R+P TRS ++TS + C G+ I+
Sbjct: 177 NTILRSPYSTRSDSITSVDSGQCSGDQIE 205
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,079,995
Number of Sequences: 27780
Number of extensions: 275855
Number of successful extensions: 973
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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