Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060297.seq
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    33   0.003
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    33   0.003
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    29   0.031
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   0.51 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   3.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   8.3  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   8.3  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 32.7 bits (71), Expect = 0.003
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +2

Query: 137 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 232
           M K++   N+ VI HVD GKST T  L+ K G
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCG 32


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 32.7 bits (71), Expect = 0.003
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +2

Query: 137 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 232
           M K++   N+ VI HVD GKST T  L+ K G
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCG 32


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 29.5 bits (63), Expect = 0.031
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = +2

Query: 164 MSVIAHVDHGKSTLTDSL 217
           ++++ HVDHGK+TL D+L
Sbjct: 148 VTIMGHVDHGKTTLLDAL 165



 Score = 24.2 bits (50), Expect = 1.2
 Identities = 15/66 (22%), Positives = 25/66 (37%)
 Frame = +1

Query: 394 EKGFLINLIDSPXHVDFSSEVTAALRVTDXXXXXXXXXXXXXXQTETVLRQAIAERIKPI 573
           E G  +  +D+P H  F S       +TD              QT   +  A   ++  I
Sbjct: 190 ESGERVTFLDTPGHAAFISMRHRGAHITDIVVLVVAADDGVKEQTLQSIEMAKDAKVPII 249

Query: 574 LFMNKM 591
           + +NK+
Sbjct: 250 VAINKI 255


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 161 NMSVIAHVDHGKSTLTDSL 217
           N+  I HV HGKST+  ++
Sbjct: 44  NIGTIGHVAHGKSTIVKAI 62


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/21 (38%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = +3

Query: 27  PFSKRTPLLAYGSW-FNRTKI 86
           PF ++T ++ +GSW FN  ++
Sbjct: 159 PFDQQTCIMKFGSWTFNGDQV 179



 Score = 22.2 bits (45), Expect = 4.8
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -1

Query: 142 VHHPTDLVYREIHH 101
           +HHP   + R++HH
Sbjct: 400 LHHPNCKINRKVHH 413


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 27  PFSKRTPLLAYGSW 68
           PF ++T +L +GSW
Sbjct: 161 PFDEQTCVLKFGSW 174


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +3

Query: 27  PFSKRTPLLAYGSW 68
           PF ++T ++ +GSW
Sbjct: 157 PFDEQTCVMKFGSW 170


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +1

Query: 298 CITIKSTAISMFF 336
           C T+K +A+ M+F
Sbjct: 688 CATVKGSAVDMYF 700


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,148
Number of Sequences: 438
Number of extensions: 3289
Number of successful extensions: 20
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)