Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060296.seq
         (688 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P41677 Cluster: Late expression factor 7; n=5; Nucleopo...   187   2e-46
UniRef50_Q91GE5 Cluster: LEF-7; n=1; Epiphyas postvittana NPV|Re...    82   1e-14
UniRef50_Q2NNV8 Cluster: LEF7; n=1; Hyphantria cunea nucleopolyh...    54   3e-06
UniRef50_O10362 Cluster: Late expression factor 7; n=5; Nucleopo...    52   1e-05
UniRef50_Q8IAQ7 Cluster: Putative uncharacterized protein PF08_0...    33   4.9  
UniRef50_Q5BT28 Cluster: SJCHGC02951 protein; n=1; Schistosoma j...    33   6.5  
UniRef50_Q98RP3 Cluster: Putative uncharacterized protein orf313...    33   8.6  

>UniRef50_P41677 Cluster: Late expression factor 7; n=5;
           Nucleopolyhedrovirus|Rep: Late expression factor 7 -
           Autographa californica nuclear polyhedrosis virus
           (AcMNPV)
          Length = 226

 Score =  187 bits (456), Expect = 2e-46
 Identities = 96/144 (66%), Positives = 101/144 (70%)
 Frame = -1

Query: 682 MSSRYKARTSQNAIRLPFEIIDTILPVFGSDFTCKSCGINNACKMQTFARQQR*RLFKLT 503
           MSS  K R     IRLP EIIDTIL         K  G+    K +           KLT
Sbjct: 1   MSSVTK-RPRAKRIRLPLEIIDTILQYLDPILHAKVVGLTTRVKCRLLRDNNVEDYLKLT 59

Query: 502 PANYHFTTDQFICNYLGITDHPMTPYLVPLLSFGKASCAFFNKCIPEDVRIVTLNRPLTS 323
           PA+YH TTDQFICNYLGIT+ PM PYLVPLLSFGKASC FFNKCIPEDVRIVTLN PL  
Sbjct: 60  PASYHPTTDQFICNYLGITNQPMAPYLVPLLSFGKASCVFFNKCIPEDVRIVTLNWPLPL 119

Query: 322 LENFLSKQFLWYKLARKLIEHERK 251
           LENFLSKQFLWYKLARKLIEHER+
Sbjct: 120 LENFLSKQFLWYKLARKLIEHERR 143



 Score =  109 bits (261), Expect = 8e-23
 Identities = 51/66 (77%), Positives = 53/66 (80%), Gaps = 13/66 (19%)
 Frame = -3

Query: 254 QMDRCVTPSTVQINLYDDNEDYLNCFDC-------------CIVDCNINDMNRCPDLQID 114
           +MDRCVTPSTVQINLYDDNEDYLNCF+C             CIVDCNINDMNRCPDLQID
Sbjct: 143 RMDRCVTPSTVQINLYDDNEDYLNCFNCFNCCKDNLVSFNCCIVDCNINDMNRCPDLQID 202

Query: 113 VYLDDN 96
           VYLDDN
Sbjct: 203 VYLDDN 208


>UniRef50_Q91GE5 Cluster: LEF-7; n=1; Epiphyas postvittana NPV|Rep:
           LEF-7 - Epiphyas postvittana nucleopolyhedrovirus
           (EppoMNPV)
          Length = 194

 Score = 82.2 bits (194), Expect = 1e-14
 Identities = 46/130 (35%), Positives = 68/130 (52%)
 Frame = -1

Query: 640 RLPFEIIDTILPVFGSDFTCKSCGINNACKMQTFARQQR*RLFKLTPANYHFTTDQFICN 461
           RLP EI + IL    +    K  G+    + +   + +      LTP NYH   D+ +  
Sbjct: 3   RLPPEIAEEILQYLPAVVHAKVLGLTPRSRKRLLHKNKLMDYLALTPVNYHLPDDKHLLA 62

Query: 460 YLGITDHPMTPYLVPLLSFGKASCAFFNKCIPEDVRIVTLNRPLTSLENFLSKQFLWYKL 281
           +    ++P+TPY+  LL   K SC FFNKCIP+ VR+  LN P  +   FL   F W+ L
Sbjct: 63  HF---ENPLTPYMA-LLCLEK-SCEFFNKCIPKHVRVAALNWPSPNNLKFLCSHFEWFAL 117

Query: 280 ARKLIEHERK 251
            +KL++HE +
Sbjct: 118 IQKLLKHEHE 127



 Score = 45.2 bits (102), Expect = 0.002
 Identities = 23/54 (42%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
 Frame = -3

Query: 254 QMDRCVTPSTVQIN-LYDDNEDYLNCFDCCIVDCNINDMNRCPDLQIDVYLDDN 96
           +  R ++P+TV+++ +   NE  LN     I+D N++D++RCP ++IDVYLDDN
Sbjct: 127 EQGRVISPNTVRVSDVKHVNE--LNSLSN-IIDINVDDVHRCPYVEIDVYLDDN 177


>UniRef50_Q2NNV8 Cluster: LEF7; n=1; Hyphantria cunea
           nucleopolyhedrovirus|Rep: LEF7 - Hyphantria cunea
           nuclear polyhedrosis virus (HcNPV)
          Length = 216

 Score = 54.0 bits (124), Expect = 3e-06
 Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
 Frame = -1

Query: 484 TTDQFICNYLGITDHPMTPYLVPLLSFGKASCA--FFNKCIPEDVRIVTLNRPLTSLENF 311
           T D+F  ++    D P   Y+  L  F  A  A  FFNKC+P       LN P  + +  
Sbjct: 70  TNDEFAAHWAIEVDDPAIAYVSQLCRFSCAIKAQKFFNKCVPNATARCMLNEPRAASDTM 129

Query: 310 LSKQFLWYKLARKLIEHERK 251
           LS ++ W++L R LI+HE K
Sbjct: 130 LSLRWGWWRLVRALIQHECK 149


>UniRef50_O10362 Cluster: Late expression factor 7; n=5;
           Nucleopolyhedrovirus|Rep: Late expression factor 7 -
           Orgyia pseudotsugata multicapsid polyhedrosis virus
           (OpMNPV)
          Length = 211

 Score = 52.0 bits (119), Expect = 1e-05
 Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 3/131 (2%)
 Frame = -1

Query: 640 RLPFEIIDTILPVFGSDFTCKSCGINNACKMQTFARQQR*RLFKLTPANYHFTTDQFICN 461
           +LPFE+ID IL     D      G + A +++   R  R   +      Y    D+    
Sbjct: 20  QLPFEMIDKILSHLPFDLHVDVVGASAATRLRALRRPDRLTRYH----EYDLAADELFAA 75

Query: 460 YLGI-TDHPMTPYLVPLLSFGKASCA--FFNKCIPEDVRIVTLNRPLTSLENFLSKQFLW 290
           +  I    P  PY+  L     AS A  FFN+ +P    +  LN P    ++ L++++ W
Sbjct: 76  HWNIEAADPARPYVGQLCRSTCASAAQKFFNERVPRAAAMCMLNAPRAESDSVLTRRWNW 135

Query: 289 YKLARKLIEHE 257
           + L R L+ HE
Sbjct: 136 WGLTRTLLIHE 146


>UniRef50_Q8IAQ7 Cluster: Putative uncharacterized protein
           PF08_0114; n=2; Plasmodium|Rep: Putative uncharacterized
           protein PF08_0114 - Plasmodium falciparum (isolate 3D7)
          Length = 2572

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = -3

Query: 215 NLYDDNEDYLN-CFDCCIVDCNINDMNRCPDLQIDVYLDDN 96
           N+ D N++ +N C D  I DCN N++N C D  I+ Y +DN
Sbjct: 656 NINDCNDNNINDCNDNNINDCNDNNINDCNDNNIN-YCNDN 695



 Score = 33.5 bits (73), Expect = 4.9
 Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = -3

Query: 215 NLYDDNEDYLN-CFDCCIVDCNINDMNRCPDLQIDVYLDDN 96
           N+ D N++ +N C D  I DCN N++N C D  I+ Y +DN
Sbjct: 728 NINDCNDNNINYCNDNNINDCNDNNINDCNDNNIN-YCNDN 767


>UniRef50_Q5BT28 Cluster: SJCHGC02951 protein; n=1; Schistosoma
           japonicum|Rep: SJCHGC02951 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 92

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +3

Query: 243 AIHLRSCSINFLANLYHKNCLDKKFSN 323
           A+H  S    F A LYH +C  KKFSN
Sbjct: 59  ALHFPSAFERFYATLYHTHCSSKKFSN 85


>UniRef50_Q98RP3 Cluster: Putative uncharacterized protein orf313;
           n=2; Eukaryota|Rep: Putative uncharacterized protein
           orf313 - Guillardia theta (Cryptomonas phi)
          Length = 313

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 246 IHLRSCSINFLANLYHKNCLDKKFSNDVNGRFNVTMRTSSGM 371
           I L+SCS+N    ++  N   KKF ND+    N+  +  S M
Sbjct: 15  IMLKSCSLNIKILIFKSNKRKKKFYNDIYSYLNILYKQFSNM 56


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 603,571,502
Number of Sequences: 1657284
Number of extensions: 11301995
Number of successful extensions: 27787
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 26625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27765
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)