Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060296.seq
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.08 |||NatA N-acetyltransferase complex subunit Ard1 |Sc...    30   0.36 
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    27   3.4  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    25   7.8  

>SPAC15E1.08 |||NatA N-acetyltransferase complex subunit Ard1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 177

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +3

Query: 507 NLNNLQRCCRAKVCILHALLIPQLLHVKSDPNTGRIVSII 626
           NL+NL    + K  + HA+  P L +V +DP  GR+V  +
Sbjct: 18  NLHNLPENYQLKYYLYHAISWPMLSYVATDPK-GRVVGYV 56


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 225 CRRCYTAIHLRSCSINFLANLYHKNC 302
           C RC  A   R   I+F  +++HK+C
Sbjct: 19  CFRCGQAFQRRETPISFGGHMWHKDC 44


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -1

Query: 406 FGKASCAFFNKCIPEDVRIVTLNRPLTSLENFLSKQFLWYKLARKLI-EHERKWI 245
           F +    F +  +P    IV    P ++ E+F  +  L++KL  K +  H+  WI
Sbjct: 309 FSQPMPQFSSSFVPGTSSIVPTLHPASAQEDFNLQHSLFFKLKLKFLPPHKLPWI 363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,610,690
Number of Sequences: 5004
Number of extensions: 51039
Number of successful extensions: 137
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)