Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060296.seq
         (688 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ441131-5|CAD29634.1|  574|Anopheles gambiae putative Na+ chann...    24   5.2  
AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium ch...    24   5.2  
AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic acetylch...    23   9.0  

>AJ441131-5|CAD29634.1|  574|Anopheles gambiae putative Na+ channel
           protein.
          Length = 574

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
 Frame = +3

Query: 225 CRRCY---TAIHLRSCSINFLANLYHK 296
           C R Y   T + + +CSI F++N+Y K
Sbjct: 59  CERAYFFLTFLVVTACSIYFISNVYIK 85


>AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium
           channel protein.
          Length = 572

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
 Frame = +3

Query: 225 CRRCY---TAIHLRSCSINFLANLYHK 296
           C R Y   T + + +CSI F++N+Y K
Sbjct: 59  CERAYFFLTFLVVTACSIYFISNVYIK 85


>AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 1 protein.
          Length = 557

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 514 IIFNVVVAQKSAFYT 558
           IIFN+ + +K+ FYT
Sbjct: 229 IIFNITLRRKTLFYT 243


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 672,516
Number of Sequences: 2352
Number of extensions: 13835
Number of successful extensions: 23
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 69413730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)