Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060296.seq
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical pr...    27   9.5  
X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase...    27   9.5  
D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosi...    27   9.5  
AF499444-1|AAM27195.1|  945|Caenorhabditis elegans poly ADP-ribo...    27   9.5  
AC024200-15|AAF36011.1|  945|Caenorhabditis elegans Poly(adp-rib...    27   9.5  

>Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical
           protein ZC84.6 protein.
          Length = 1474

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 248 DRCVTPSTVQINLYDDNED-YLNCFDCCIVDCNINDMNRCP 129
           D+ V      + +  DNE  Y+N  D  + +C IN+ N CP
Sbjct: 754 DQSVCCGATDMGVCPDNEKAYINSMDGTVRECLINEHNSCP 794


>Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical protein
            F18C12.1 protein.
          Length = 4171

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = -1

Query: 622  IDTILPVFGSDFTCKSCGINNACKMQTFARQQR*RLF 512
            ++TI+ +FG   T KSC   ++ +++T ARQ +  +F
Sbjct: 3414 VNTIMHLFGK--TIKSCEDKSSTRVETLARQMQLTVF 3448


>Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical protein
            ZK1067.1 protein.
          Length = 1323

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/23 (52%), Positives = 19/23 (82%), Gaps = 1/23 (4%)
 Frame = -1

Query: 373  CIPED-VRIVTLNRPLTSLENFL 308
            C+ +D ++IVT+ RPL +L+NFL
Sbjct: 953  CMHDDGLKIVTIYRPLGNLQNFL 975


>X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase
            protein.
          Length = 1323

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/23 (52%), Positives = 19/23 (82%), Gaps = 1/23 (4%)
 Frame = -1

Query: 373  CIPED-VRIVTLNRPLTSLENFL 308
            C+ +D ++IVT+ RPL +L+NFL
Sbjct: 953  CMHDDGLKIVTIYRPLGNLQNFL 975


>D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosine
            kinase protein.
          Length = 1374

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/23 (52%), Positives = 19/23 (82%), Gaps = 1/23 (4%)
 Frame = -1

Query: 373  CIPED-VRIVTLNRPLTSLENFL 308
            C+ +D ++IVT+ RPL +L+NFL
Sbjct: 1004 CMHDDGLKIVTIYRPLGNLQNFL 1026


>AF499444-1|AAM27195.1|  945|Caenorhabditis elegans poly ADP-ribose
           metabolism enzyme-1 protein.
          Length = 945

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = -1

Query: 430 PYLVPLLSFGKASCAFFNKCIPEDVRIVTLNRPLTSLENFLSKQF----LWYKLAR 275
           PY +     G+++C    K I  D   +++NRP T  +  +   F     W K+ R
Sbjct: 9   PYAIEYAKSGRSNCKTCKKNIALDQLRMSMNRPSTFFDGNMDSWFHYNCFWIKMIR 64


>AC024200-15|AAF36011.1|  945|Caenorhabditis elegans
           Poly(adp-ribose) metabolism enzymeprotein 1 protein.
          Length = 945

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = -1

Query: 430 PYLVPLLSFGKASCAFFNKCIPEDVRIVTLNRPLTSLENFLSKQF----LWYKLAR 275
           PY +     G+++C    K I  D   +++NRP T  +  +   F     W K+ R
Sbjct: 9   PYAIEYAKSGRSNCKTCKKNIALDQLRMSMNRPSTFFDGNMDSWFHYNCFWIKMIR 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,595,405
Number of Sequences: 27780
Number of extensions: 296976
Number of successful extensions: 826
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)