Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060296.seq
         (688 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01190.1 68417.m00157 phosphatidylinositol-4-phosphate 5-kina...    32   0.41 
At5g40030.1 68418.m04854 protein kinase, putative similar to stp...    29   2.2  
At1g74220.1 68414.m08596 expressed protein similar to GB:AAD2007...    29   2.9  
At5g67480.2 68418.m08510 TAZ zinc finger family protein / BTB/PO...    27   8.8  
At5g67480.1 68418.m08509 TAZ zinc finger family protein / BTB/PO...    27   8.8  

>At4g01190.1 68417.m00157 phosphatidylinositol-4-phosphate 5-kinase
           family protein similar to
           phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1
           [Arabidopsis thaliana] GI:3702691; contains Pfam profile
           PF01504: Phosphatidylinositol-4-phosphate 5-Kinase
          Length = 401

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -2

Query: 612 FCQYLDPISHAKVVGLTTRVKCRLLRDNNVEDY 514
           FC Y+DP++  +++   T++ C LL +  + DY
Sbjct: 180 FCFYVDPLARQRII-KQTKLDCELLEEEGIMDY 211


>At5g40030.1 68418.m04854 protein kinase, putative similar to stpk1
           protein kinase [Solanum tuberosum]
           gi|1200256|emb|CAA62476
          Length = 499

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -1

Query: 457 LGITDHPMTPYLVPLLSFGKASCAFFNKCIPEDVRIVTLNRP 332
           LG+ DHP  P L       K SC     C   D+ I+   +P
Sbjct: 166 LGLLDHPFLPTLYSHFETEKFSCLLMEFCSGGDLHILRQKQP 207


>At1g74220.1 68414.m08596 expressed protein similar to GB:AAD20071
           from [Arabidopsis thaliana]
          Length = 316

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -3

Query: 239 VTPSTVQINLYDDNEDYLNCFDCCIVDC 156
           V P T      D N  +L+CF CC   C
Sbjct: 288 VAPKTEADRASDRNPKWLSCFPCCTTSC 315


>At5g67480.2 68418.m08510 TAZ zinc finger family protein / BTB/POZ
           domain-containing protein contains Pfam PF00651 :
           BTB/POZ domain; contains Pfam PF02135 : TAZ zinc finger;
           simiar to Chain A, Taz2 Domain Of The Transcriptional
           Adaptor Protein Cbp (GI:11514507) [Homo sapiens];
           similar to (SP:Q09472) E1A-associated protein p300
           (SP:Q09472) [Homo sapiens];  similar to histone
           acetyltransferase HAC4 (GI:21105785) [Arabidopsis
           thaliana]
          Length = 383

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 668 QSAHEPKRHTFTIRNYRHDSASIWIRF 588
           Q+    K HT +IR   HD+  ++IRF
Sbjct: 103 QAKRHGKWHTISIRGVPHDAVRVFIRF 129


>At5g67480.1 68418.m08509 TAZ zinc finger family protein / BTB/POZ
           domain-containing protein contains Pfam PF00651 :
           BTB/POZ domain; contains Pfam PF02135 : TAZ zinc finger;
           simiar to Chain A, Taz2 Domain Of The Transcriptional
           Adaptor Protein Cbp (GI:11514507) [Homo sapiens];
           similar to (SP:Q09472) E1A-associated protein p300
           (SP:Q09472) [Homo sapiens];  similar to histone
           acetyltransferase HAC4 (GI:21105785) [Arabidopsis
           thaliana]
          Length = 372

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 668 QSAHEPKRHTFTIRNYRHDSASIWIRF 588
           Q+    K HT +IR   HD+  ++IRF
Sbjct: 92  QAKRHGKWHTISIRGVPHDAVRVFIRF 118


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,264,473
Number of Sequences: 28952
Number of extensions: 257286
Number of successful extensions: 636
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)