Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060295.seq
         (673 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q13951 Cluster: Core-binding factor subunit beta; n=42;...    93   6e-18
UniRef50_Q4H3S2 Cluster: Core-binding factor, b subunit; n=1; Ci...    91   3e-17
UniRef50_UPI0000E24525 Cluster: PREDICTED: hypothetical protein ...    75   1e-12
UniRef50_Q4RCC9 Cluster: Chromosome undetermined SCAF19216, whol...    69   1e-10
UniRef50_UPI000155C339 Cluster: PREDICTED: similar to core-bindi...    66   7e-10
UniRef50_Q4UK97 Cluster: Lipoyl synthase; n=131; Bacteria|Rep: L...    36   1.2  
UniRef50_Q034X9 Cluster: Predicted transcriptional regulator; n=...    34   3.6  
UniRef50_UPI0000E4614C Cluster: PREDICTED: similar to smad nucle...    33   4.8  
UniRef50_UPI000023DD06 Cluster: hypothetical protein FG06175.1; ...    33   4.8  
UniRef50_Q5KLN9 Cluster: Hydantoinase, putative; n=2; Filobasidi...    33   4.8  
UniRef50_Q4DHE6 Cluster: Putative uncharacterized protein; n=2; ...    33   6.3  

>UniRef50_Q13951 Cluster: Core-binding factor subunit beta; n=42;
           Eumetazoa|Rep: Core-binding factor subunit beta - Homo
           sapiens (Human)
          Length = 182

 Score = 93.1 bits (221), Expect = 6e-18
 Identities = 38/62 (61%), Positives = 51/62 (82%)
 Frame = +3

Query: 255 DQKAKFESDDLFKRLSRESEVRYTGYRDRPPEERQMRFMSGCREGHTEIAFTGTGTNLQL 434
           DQ++KFE+++ F++LSRE E++YTG+RDRP EERQ RF + CR+G +EIAF  TGTNL L
Sbjct: 7   DQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIAFVATGTNLSL 66

Query: 435 VF 440
            F
Sbjct: 67  QF 68



 Score = 74.5 bits (175), Expect = 2e-12
 Identities = 32/53 (60%), Positives = 38/53 (71%)
 Frame = +2

Query: 515 IMNGVCVRWRGWIDLERLDGAGCLELXEERAAIEDAALRDQIERYNQRLRDFE 673
           I+NGVCV W+GWIDL+RLDG GCLE  EERA  EDA  +   E   +R R+FE
Sbjct: 102 ILNGVCVIWKGWIDLQRLDGMGCLEFDEERAQQEDALAQQAFEEARRRTREFE 154


>UniRef50_Q4H3S2 Cluster: Core-binding factor, b subunit; n=1; Ciona
           intestinalis|Rep: Core-binding factor, b subunit - Ciona
           intestinalis (Transparent sea squirt)
          Length = 181

 Score = 90.6 bits (215), Expect = 3e-17
 Identities = 44/92 (47%), Positives = 62/92 (67%), Gaps = 8/92 (8%)
 Frame = +3

Query: 252 ADQKAKFESDDLFKRLSRESEVRYTGYRDRPPEERQMRFMSGCREGHTEIAFTGTGTNLQ 431
           +DQ+A ++S++LF+RLSR++E++YTGYRDR  EERQ+RF + CR G  EIAF G+GTN  
Sbjct: 10  SDQRATYDSNELFRRLSRDTEIKYTGYRDRGTEERQLRFQNSCRAGRAEIAFVGSGTNFT 69

Query: 432 LVF-DHSPYNNRG-------CDFQKENGKAHI 503
           L F   S    +G        +F +E GK H+
Sbjct: 70  LQFYPWSVEGGQGITPPKDYVNFDREPGKVHL 101



 Score = 53.6 bits (123), Expect = 4e-06
 Identities = 21/35 (60%), Positives = 27/35 (77%)
 Frame = +2

Query: 512 FIMNGVCVRWRGWIDLERLDGAGCLELXEERAAIE 616
           FI+NGVCV W+GW+DL RL+G G +   EERA +E
Sbjct: 105 FILNGVCVCWKGWMDLHRLEGMGSIVYDEERAQLE 139


>UniRef50_UPI0000E24525 Cluster: PREDICTED: hypothetical protein
           LOC468115, partial; n=1; Pan troglodytes|Rep: PREDICTED:
           hypothetical protein LOC468115, partial - Pan
           troglodytes
          Length = 197

 Score = 75.4 bits (177), Expect = 1e-12
 Identities = 29/49 (59%), Positives = 42/49 (85%)
 Frame = +3

Query: 255 DQKAKFESDDLFKRLSRESEVRYTGYRDRPPEERQMRFMSGCREGHTEI 401
           DQ++KFE+++ F++LSRE E++YTG+RDRP EERQ RF + CR+G +EI
Sbjct: 78  DQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEI 126



 Score = 37.5 bits (83), Expect = 0.29
 Identities = 15/27 (55%), Positives = 22/27 (81%)
 Frame = +3

Query: 255 DQKAKFESDDLFKRLSRESEVRYTGYR 335
           DQ++KFE+++ F++LSRE EVR  G R
Sbjct: 7   DQRSKFENEEFFRKLSRECEVRQAGGR 33


>UniRef50_Q4RCC9 Cluster: Chromosome undetermined SCAF19216, whole
           genome shotgun sequence; n=6; Euteleostomi|Rep:
           Chromosome undetermined SCAF19216, whole genome shotgun
           sequence - Tetraodon nigroviridis (Green puffer)
          Length = 76

 Score = 68.9 bits (161), Expect = 1e-10
 Identities = 32/53 (60%), Positives = 36/53 (67%)
 Frame = +2

Query: 515 IMNGVCVRWRGWIDLERLDGAGCLELXEERAAIEDAALRDQIERYNQRLRDFE 673
           I+NGVCV W+GWIDL RLDG G LE  EERA  EDA  +   E   +R RDFE
Sbjct: 9   ILNGVCVIWKGWIDLHRLDGMGYLEYDEERAQHEDALAQAAFEEARRRNRDFE 61


>UniRef50_UPI000155C339 Cluster: PREDICTED: similar to core-binding
           factor, beta subunit, partial; n=1; Ornithorhynchus
           anatinus|Rep: PREDICTED: similar to core-binding factor,
           beta subunit, partial - Ornithorhynchus anatinus
          Length = 117

 Score = 66.1 bits (154), Expect = 7e-10
 Identities = 27/42 (64%), Positives = 33/42 (78%)
 Frame = +3

Query: 315 VRYTGYRDRPPEERQMRFMSGCREGHTEIAFTGTGTNLQLVF 440
           ++YTG+RDRP EERQ RF + CR+G +EIAF  TGTNL L F
Sbjct: 1   IKYTGFRDRPHEERQARFQNACRDGRSEIAFVATGTNLSLQF 42


>UniRef50_Q4UK97 Cluster: Lipoyl synthase; n=131; Bacteria|Rep:
           Lipoyl synthase - Rickettsia felis (Rickettsia azadi)
          Length = 301

 Score = 35.5 bits (78), Expect = 1.2
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +1

Query: 235 KMPRVVPIKKPNSNQTISSKDLAEKVRLDTLDTETGLPKNARCGS 369
           K P  + +K PNS +  ++KDL + +RL+T+  E   P    C S
Sbjct: 6   KRPDWIKVKAPNSAEYYNTKDLIKNLRLNTVCEEAACPNIGECWS 50


>UniRef50_Q034X9 Cluster: Predicted transcriptional regulator; n=1;
           Lactobacillus casei ATCC 334|Rep: Predicted
           transcriptional regulator - Lactobacillus casei (strain
           ATCC 334)
          Length = 343

 Score = 33.9 bits (74), Expect = 3.6
 Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +3

Query: 252 ADQKAKFESDD-LFKRLSRESEVRYTGYRDRPPEERQMRFMSGCREGHTEIAFTGTGTNL 428
           +D++A  + D+  F R   +     T +R +P  +   RF  G  + HT   + G   NL
Sbjct: 189 SDEQADDDPDEGKFVRFRLDYMRNITYHRQQPTHDHDERFRGGRLQNHTWYPYLGKPINL 248

Query: 429 QLVFDHSP 452
           ++++ + P
Sbjct: 249 EILYSYDP 256


>UniRef50_UPI0000E4614C Cluster: PREDICTED: similar to smad nuclear
           interacting protein; n=1; Strongylocentrotus
           purpuratus|Rep: PREDICTED: similar to smad nuclear
           interacting protein - Strongylocentrotus purpuratus
          Length = 923

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 8/111 (7%)
 Frame = +3

Query: 180 GHVAF*LYLRAAKAKV-HFQNATCS-ADQKAKFESDDLFKRLSRESEVRYTGYRDRPPEE 353
           G +AF L     K+K   FQ +  + + Q+ K +S D+ KRL ++SE       + PP  
Sbjct: 178 GTIAFALPKTLPKSKHGSFQGSEAAQSKQEEKDKSSDVSKRLDKKSEENEKAAANAPPLP 237

Query: 354 RQMRFMSG--CREGHTEIAFTGTGTNLQLVFDHSPYNNRG----CDFQKEN 488
            +    SG   +E H E+   G+  + ++  +  PY+  G    CDFQ ++
Sbjct: 238 YKEPSWSGVPSQEYHLEVLKNGSILS-KVALNDKPYHVFGRLASCDFQMDH 287


>UniRef50_UPI000023DD06 Cluster: hypothetical protein FG06175.1;
           n=1; Gibberella zeae PH-1|Rep: hypothetical protein
           FG06175.1 - Gibberella zeae PH-1
          Length = 1138

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 25/93 (26%), Positives = 36/93 (38%)
 Frame = +3

Query: 378 CREGHTEIAFTGTGTNLQLVFDHSPYNNRGCDFQKENGKAHIXXXXXXXXXXXXGEVGSI 557
           C   HT  A      N++ VF H  +   G DFQ E GK  +            G+    
Sbjct: 244 CDSAHTRTALEALHENIR-VFRHPDHYPTGYDFQSELGKT-VKALTSFDLFKASGDALKA 301

Query: 558 WNGSMAPVVLSWXRREQRLKMQHYVIRSRGTIN 656
             G+   VVL W   E+ L + +  I   G ++
Sbjct: 302 VYGTAGDVVLYWAHHEKLLVIDNGKIGFMGGLD 334


>UniRef50_Q5KLN9 Cluster: Hydantoinase, putative; n=2;
           Filobasidiella neoformans|Rep: Hydantoinase, putative -
           Cryptococcus neoformans (Filobasidiella neoformans)
          Length = 999

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +1

Query: 196 DSIYEQPKPRFIF-KMPRVVPIKKPNSNQTISSKDLA 303
           DS  +  KP FI+ K+ RV PI   N+N+ I  KD+A
Sbjct: 546 DSRLQNAKPSFIWDKITRVTPIPAANANRQIPDKDIA 582


>UniRef50_Q4DHE6 Cluster: Putative uncharacterized protein; n=2;
           Trypanosoma cruzi|Rep: Putative uncharacterized protein
           - Trypanosoma cruzi
          Length = 703

 Score = 33.1 bits (72), Expect = 6.3
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
 Frame = +2

Query: 473 LSKGKWKSSHRI-RFIMNGVCVRWRGWIDLERLDGAGCLEL--XEERAAIEDAALRDQIE 643
           L +GK +SS  +  F + GVC     WID    D    LE+     R+  E AA  ++  
Sbjct: 75  LPRGKSQSSELVCAFFLRGVCHVKLSWIDKAIADFTAALEIDPSHSRSTYERAACHNRKG 134

Query: 644 RYNQRLRDFE 673
            Y   + D+E
Sbjct: 135 NYTAAILDYE 144


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 646,989,778
Number of Sequences: 1657284
Number of extensions: 12999625
Number of successful extensions: 37283
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 36060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37277
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51652897375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)