Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060295.seq
(673 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35520| Best HMM Match : CBF_beta (HMM E-Value=0) 88 5e-18
SB_40713| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 6e-07
SB_33371| Best HMM Match : SRF-TF (HMM E-Value=2.4e-24) 31 0.84
SB_17445| Best HMM Match : YDG_SRA (HMM E-Value=1.3) 31 0.84
SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_52374| Best HMM Match : GATase_2 (HMM E-Value=0) 29 4.5
SB_54230| Best HMM Match : EGF (HMM E-Value=0) 28 6.0
SB_52913| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_20373| Best HMM Match : RDD (HMM E-Value=6.8e-12) 28 7.9
SB_9921| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_35520| Best HMM Match : CBF_beta (HMM E-Value=0)
Length = 174
Score = 88.2 bits (209), Expect = 5e-18
Identities = 40/86 (46%), Positives = 59/86 (68%), Gaps = 3/86 (3%)
Frame = +3
Query: 255 DQKAKFESDDLFKRLSRESEVRYTGYRDRPPEERQMRFMSGCREGHTEIAFTGTGTNLQL 434
+QK KFE+D++F++L+RESE++YTGYRDR EER +RF + R+G + +A+ +GTNL L
Sbjct: 7 EQKQKFENDEMFRKLARESEIKYTGYRDRSHEERVVRFQTEIRDGQSNVAYVASGTNLTL 66
Query: 435 VFDHSP---YNNRGCDFQKENGKAHI 503
F + + DF +E GK HI
Sbjct: 67 HFPKAEDGFIRSEFLDFDREPGKVHI 92
Score = 69.7 bits (163), Expect = 2e-12
Identities = 29/54 (53%), Positives = 41/54 (75%)
Frame = +2
Query: 512 FIMNGVCVRWRGWIDLERLDGAGCLELXEERAAIEDAALRDQIERYNQRLRDFE 673
FI+NGVC+ ++GWIDL+RLDG G +E EE+A ED +R+ +E+ QRL +FE
Sbjct: 96 FILNGVCIIFKGWIDLQRLDGIGYIEYDEEKARKEDKIMRETLEQAKQRLAEFE 149
>SB_40713| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 39
Score = 51.6 bits (118), Expect = 6e-07
Identities = 20/32 (62%), Positives = 27/32 (84%)
Frame = +2
Query: 512 FIMNGVCVRWRGWIDLERLDGAGCLELXEERA 607
FI+NGVC+ ++GWIDL+RLDG G +E EE+A
Sbjct: 7 FILNGVCIIFKGWIDLQRLDGIGYIEYDEEKA 38
>SB_33371| Best HMM Match : SRF-TF (HMM E-Value=2.4e-24)
Length = 333
Score = 31.1 bits (67), Expect = 0.84
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +1
Query: 235 KMPRVVPIKKPNSNQTISSKDLAEKVRLDTLDTETGLPKNA 357
+MP +P++ NSN S ++ +DT+ + +G+P ++
Sbjct: 145 QMPVAIPVQHSNSNDDNSGYSVSRSSSVDTIGSNSGMPNSS 185
>SB_17445| Best HMM Match : YDG_SRA (HMM E-Value=1.3)
Length = 284
Score = 31.1 bits (67), Expect = 0.84
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +1
Query: 199 SIYEQPKPRFIFKMPRVVPIKKPNSNQTISSKDLAEKV 312
+I ++ P F F P+++P+ KP S + S+KD+ +KV
Sbjct: 54 NINQEHVPNFAFVRPQILPVLKPKSWER-STKDMIKKV 90
>SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1396
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 323 HWIPRPASRRTPDAVHERLPRGTHGDSVYRYRHKPSACLRSLT 451
H + TP + ++ RG GDSV RH P LR+L+
Sbjct: 847 HAVDEDGKPSTPPSRSKKRTRGISGDSVSDNRHTPRRSLRNLS 889
>SB_52374| Best HMM Match : GATase_2 (HMM E-Value=0)
Length = 1075
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +3
Query: 261 KAKFESDDLFKRLSRESEVRYTGYRDRPPEERQM-RFMSGCREGHTEIAFTGT 416
KAK E D+F +++ E E++ G+R+ P ++ + + GC+ ++ T +
Sbjct: 431 KAK-EGKDMFTKIAEEYEIQVLGWREIPYDDTSLGKTSKGCQPYMEQVFVTSS 482
>SB_54230| Best HMM Match : EGF (HMM E-Value=0)
Length = 1359
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -3
Query: 200 ESKGNMPANGEGSLIACITYGSYSFACTEPNIT*RACLTD 81
E K + P +G+ + TYGSYS AC +T + C TD
Sbjct: 762 ECKPSNPCRNDGTCVN--TYGSYSCAC-PTGLTGKNCETD 798
>SB_52913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 398 DSVYRYRHKPSACLRSLTLQQPRLRLSKGKWKSSHRIRFIMNG 526
D + + P +LTL RL L++GK K+S R +M+G
Sbjct: 2 DGILKNTADPENSPDALTLSWRRLLLTRGKLKASSRTSALMSG 44
>SB_20373| Best HMM Match : RDD (HMM E-Value=6.8e-12)
Length = 434
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -3
Query: 269 FGFLIGTTRGILKMNLGFGCS*IESKGNMPAN 174
FG L+G R I + + FGCS + ++ ++ N
Sbjct: 77 FGLLLGVLRMIQERLINFGCSKVHNRESLETN 108
>SB_9921| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 530
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 581 CLELXEERAAIEDAALRDQIERYNQRLRDF 670
CL EE A A R +ER+N+RL+ F
Sbjct: 479 CLTKEEELATKRIAKARIHVERFNERLKKF 508
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,384,007
Number of Sequences: 59808
Number of extensions: 425822
Number of successful extensions: 1177
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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