Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060295.seq
         (673 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40942-9|AAC47074.6|  703|Caenorhabditis elegans Synaptogenesis ...    31   0.99 
U40427-1|AAA81467.2|  798|Caenorhabditis elegans Hypothetical pr...    28   5.3  

>U40942-9|AAC47074.6|  703|Caenorhabditis elegans Synaptogenesis
           abnormal protein 1 protein.
          Length = 703

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 257 IGTTRGILKMNLGFGCS*IESKGNMPAN-GEGSLIACIT 144
           IGTTRG +K+N+ FG   + +  +   N G+ +   C T
Sbjct: 342 IGTTRGSIKLNVAFGARIMSTSQDKEVNEGDNAFFHCAT 380


>U40427-1|AAA81467.2|  798|Caenorhabditis elegans Hypothetical
           protein F43C9.3 protein.
          Length = 798

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/20 (65%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = -2

Query: 513 NRI-RCELFHFPFESRSRGC 457
           NR+ R  L HFP ES SRGC
Sbjct: 374 NRLHRISLKHFPIESMSRGC 393


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,670,481
Number of Sequences: 27780
Number of extensions: 303495
Number of successful extensions: 804
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)