Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060295.seq
         (673 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    25   0.50 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    24   1.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   1.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.0  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   3.5  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   8.1  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 25.4 bits (53), Expect = 0.50
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +1

Query: 412 VPAQTFSLSSITHPTTTAAATFKRKMEKLTSYPIHHERC 528
           +P  T+S S    P     +  K KME +    +HH  C
Sbjct: 367 LPTSTYSGSPTELPKHLPTSLTKSKMEVMELSDLHHPNC 405


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +1

Query: 229 IFKMPRVVPIKKPNSNQTISSKDLAEKVRLDTLDTETGLPKN 354
           I++  + VP+KK NS   + S    +  R       TGL ++
Sbjct: 318 IYRRKKTVPLKKVNSKYILKSTLTPKLARKQFQKNTTGLERS 359


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +2

Query: 383 RGTHGDSVYRYRHKPSACLRSLTLQQPRLRLSKGKWKSSHRIRFIMNGV 529
           R ++G     +R +   CL+S   ++ +    +G W S  +I FI++ V
Sbjct: 40  RVSNGGKEQDFRFEAIQCLQSSAFKEIKTLPDRGMWSS--KIEFILSVV 86


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 429  QLVFDHSPYNNRGCDFQKENGKAH 500
            +L     PY     DF KE+GK H
Sbjct: 1017 RLSSSEKPYMFETVDFSKEDGKEH 1040


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 285 DRLIRIWLFDRHYTWHFENE 226
           +R I+IW  +R   W  EN+
Sbjct: 311 ERQIKIWFQNRRMKWKKENK 330


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/30 (23%), Positives = 19/30 (63%)
 Frame = -2

Query: 522 FMMNRIRCELFHFPFESRSRGCCRVSDRRQ 433
           F+++R+R +LF    + +S  C +  ++++
Sbjct: 96  FIVDRLRNDLFECENKEKSNVCLKFEEQKR 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,808
Number of Sequences: 438
Number of extensions: 4490
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)