Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060295.seq
         (673 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43660.1 68418.m05336 expressed protein similar to unknown pr...    31   0.53 
At1g51120.1 68414.m05747 AP2 domain-containing transcription fac...    29   3.7  
At2g31830.1 68415.m03887 endonuclease/exonuclease/phosphatase fa...    28   6.5  
At2g07040.1 68415.m00805 leucine-rich repeat transmembrane prote...    28   6.5  
At1g55380.1 68414.m06334 DC1 domain-containing protein contains ...    27   8.6  

>At5g43660.1 68418.m05336 expressed protein similar to unknown
           protein (gb|AAB72163.1)
          Length = 361

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = +3

Query: 243 TCSADQKAKFESDDLFKRLSRE---SEVRYTGYRDRPPEERQMRF 368
           T + ++KAKF SD L K +SRE     +R+  YR+      Q RF
Sbjct: 44  TANREEKAKFMSDILHKYISREECAKAIRFKNYREWIMSNYQPRF 88


>At1g51120.1 68414.m05747 AP2 domain-containing transcription
           factor, putative similar to DNA-binding protein RAV1
           GI:3868857 from [Arabidopsis thaliana]
          Length = 352

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = -3

Query: 89  LTDSALRMTK-IIPIDVRTTTRPPASVTS 6
           LTDS L +TK + P +V TTT+P  S T+
Sbjct: 17  LTDSVLSLTKRMKPTEVTTTTKPALSNTT 45


>At2g31830.1 68415.m03887 endonuclease/exonuclease/phosphatase
           family protein belongs to Pfam:PF03372:
           Endonuclease/Exonuclease/phosphatase family; contains 4
           WD-40 repeats (PF00400);similar to SP:Q01968 Inositol
           polyphosphate 5-phosphatase OCRL-1 (EC 3.1.3.-)(Lowe's
           oculocerebrorenal syndrome protein) (SP:Q01968) [Homo
           sapiens]
          Length = 1144

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 549 GSIWNGSMAPVVLSWXRREQRLK 617
           GSIW GSM  V+  W     RL+
Sbjct: 459 GSIWTGSMNGVIAQWDGNGSRLR 481


>At2g07040.1 68415.m00805 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 647

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 207 RAAKAKVHFQNATCSADQKAKFESDDLFK 293
           RAAK  +H    +   D K KFE  DL K
Sbjct: 310 RAAKKMIHTTKLSFLRDDKGKFELQDLLK 338


>At1g55380.1 68414.m06334 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 661

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 483 PFESRSRGCCRVSDRRQAEGLCRYR 409
           P+ SR++  CR+SD  Q   LCR R
Sbjct: 6   PYFSRAKPPCRLSDPAQPHMLCRRR 30


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,983,678
Number of Sequences: 28952
Number of extensions: 288792
Number of successful extensions: 804
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)