Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060294.seq
         (677 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00015A5DE0 Cluster: UPI00015A5DE0 related cluster; n...    36   0.91 
UniRef50_A7AQ37 Cluster: Putative uncharacterized protein; n=1; ...    35   1.6  
UniRef50_Q4SKZ5 Cluster: Chromosome 17 SCAF14563, whole genome s...    33   4.8  
UniRef50_UPI000051AAC3 Cluster: PREDICTED: similar to CG11533-PA...    33   8.4  
UniRef50_UPI000065E81A Cluster: Homolog of Homo sapiens "Splice ...    33   8.4  
UniRef50_Q89NZ1 Cluster: Bll3692 protein; n=2; Bradyrhizobiaceae...    33   8.4  

>UniRef50_UPI00015A5DE0 Cluster: UPI00015A5DE0 related cluster; n=1;
           Danio rerio|Rep: UPI00015A5DE0 UniRef100 entry - Danio
           rerio
          Length = 413

 Score = 35.9 bits (79), Expect = 0.91
 Identities = 19/48 (39%), Positives = 22/48 (45%)
 Frame = -2

Query: 637 CSNNPVRHAVHLLTSTATHTRRICHDAVPGYSGVHASAPSTETLLLVA 494
           CS++P  H  H  T T THT R  H  V  Y    +S   T T L  A
Sbjct: 231 CSDHPQLHHTHTHTHTHTHTHRNIHACVHLYGSASSSRTHTHTHLQTA 278


>UniRef50_A7AQ37 Cluster: Putative uncharacterized protein; n=1;
           Babesia bovis|Rep: Putative uncharacterized protein -
           Babesia bovis
          Length = 983

 Score = 35.1 bits (77), Expect = 1.6
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = +3

Query: 234 DHSHQRCMTARILDFGVCCINHRRDRAVCRKSKTPTPQDV 353
           DH H+RC   R      CC   RRDR  C+ S    P+DV
Sbjct: 761 DHRHKRCHHKR--KHKHCCSRKRRDRVQCKCSHEDVPKDV 798


>UniRef50_Q4SKZ5 Cluster: Chromosome 17 SCAF14563, whole genome
           shotgun sequence; n=5; Tetraodontidae|Rep: Chromosome 17
           SCAF14563, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 760

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -2

Query: 487 TARGVRYKSATAYCD*TVPVK-WSLXSRSHEYNYVLNNGSTELCQETSCGVGVLL 326
           T RG+R K     C      K WSL     +Y++V NN ST++    S  +GV L
Sbjct: 392 TYRGIRRKGNANECSLGWNDKSWSLYCSDSKYSFVHNNKSTDIAGPVSSRIGVYL 446


>UniRef50_UPI000051AAC3 Cluster: PREDICTED: similar to CG11533-PA,
            isoform A; n=1; Apis mellifera|Rep: PREDICTED: similar to
            CG11533-PA, isoform A - Apis mellifera
          Length = 1110

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = -1

Query: 341  RRCLALPTHSTIATMINATHSKIENSSGHTALMR 240
            RRCLALP  S+I + + A  ++ EN +G T  +R
Sbjct: 972  RRCLALPDESSIFSSLTANSTEDENLTGCTPALR 1005


>UniRef50_UPI000065E81A Cluster: Homolog of Homo sapiens "Splice
           Isoform 1 of Tripartite motif protein 16; n=1; Takifugu
           rubripes|Rep: Homolog of Homo sapiens "Splice Isoform 1
           of Tripartite motif protein 16 - Takifugu rubripes
          Length = 446

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -2

Query: 487 TARGVRYKSATAYCD*TVPVK-WSLXSRSHEYNYVLNNGSTELCQETSCGVGVLL 326
           T RG+R K     C      K WSL     +Y++V NN ST++    S  +GV L
Sbjct: 361 TYRGIRRKGNGNECSLGWNDKSWSLYCSDSKYSFVHNNKSTDIAGPVSSRIGVYL 415


>UniRef50_Q89NZ1 Cluster: Bll3692 protein; n=2;
           Bradyrhizobiaceae|Rep: Bll3692 protein - Bradyrhizobium
           japonicum
          Length = 806

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
 Frame = -2

Query: 541 GVHASAPSTETLLLVAKXTARGVRYKSATAYCD*TVPVKW-----SLXSRSHEYNYVL-- 383
           G HA AP  +T  +  + TARG+     TA C    P  W     +  S SH Y Y L  
Sbjct: 604 GTHALAPMLDTGFIRDQLTARGL-----TAACTSAAPPMWLAGSFAGLSPSHAYLYALFG 658

Query: 382 -NNGSTELCQETSCG 341
            N    ++ +ET CG
Sbjct: 659 ANRLPADVFEETPCG 673


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 644,473,363
Number of Sequences: 1657284
Number of extensions: 12574924
Number of successful extensions: 27551
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 26567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27525
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52479343733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)