Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060294.seq
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    29   0.47 
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    26   5.8  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   7.6  

>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1004

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
 Frame = +1

Query: 373  NRCXEHNYTREIVXLMTTLPVQSNRNTLSH--SCTERHAQXFLPPAARFPSKGLTHVHLS 546
            NR     +T E   +++  P +S +  L+   S T + AQ ++PP  +   KG       
Sbjct: 894  NRAESKVHTLETPKVISARPAESVKQPLTPVPSMTSQSAQSYIPPRRQQQQKGFFAQIND 953

Query: 547  TLEQRHGKFGG 579
             L QR    GG
Sbjct: 954  HLAQRGNMLGG 964


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = -2

Query: 646 HLQCSNNPVRHAVHLLTSTATHTRRICHDAV---PGYSGVHASAPSTETL 506
           +L+ S N + + V  LTS     + + HD++   P +  + AS P  E L
Sbjct: 433 YLRLSQNDIDNVVKFLTSCYKLKKLVLHDSLALAPHFFEIFASLPELEHL 482


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 429  TGTV*SQYAVALLYRTPRAVIFATSSKVSVEGADACT 539
            TG++ S  A A +  +P + + A SS  SVEG  + T
Sbjct: 1075 TGSLSSSIATASVTGSPTSSVTAVSSTSSVEGTASST 1111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,682,191
Number of Sequences: 5004
Number of extensions: 52517
Number of successful extensions: 108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)