Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060294.seq
         (677 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1134 - 34352154-34352375,34353683-34353746,34353820-343548...    36   0.023
03_01_0174 + 1410322-1410345,1410458-1410760,1411914-1412034,141...    28   7.9  
01_01_0453 - 3361460-3361549,3361660-3361846,3362038-3362139,336...    28   7.9  

>02_05_1134 - 34352154-34352375,34353683-34353746,34353820-34354859,
            34355193-34355261,34355502-34355606,34355992-34356161,
            34356244-34356351,34356397-34356525,34356577-34356681,
            34357186-34357475,34357575-34357679,34358195-34358289,
            34358474-34358569,34358660-34358782,34359120-34359174,
            34359254-34359417,34359881-34359971,34360180-34360334,
            34360823-34361002,34361314-34361487,34361776-34361917,
            34362023-34362325,34362443-34362522
          Length = 1354

 Score = 36.3 bits (80), Expect = 0.023
 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
 Frame = +1

Query: 343  RRMSPGIVPWNRCXEHNYTREIVXLMTTLPVQS-NRNTLSHSCTERHAQXFLPPAARFPS 519
            RR + G+V  N   +     E    +  L ++S    T +H C+    + +  P AR PS
Sbjct: 1245 RRRAGGLVRRNTVAQSKLIPENPGQLERLCIKSFGTKTDNHVCSAEWRKRWPSPPARQPS 1304

Query: 520  KGLTHVHLSTLEQRHGKFGGCV 585
             G  H HL+ L  RH  FG  V
Sbjct: 1305 PGFKHHHLAELRIRHA-FGVAV 1325


>03_01_0174 +
           1410322-1410345,1410458-1410760,1411914-1412034,
           1412147-1412321,1412417-1412487,1412586-1413268
          Length = 458

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = -1

Query: 572 NLP*RCSRVLRCTCVSPFDGNLAAGGKNXCAWRSVQECDSVLRLDCTGKVVINXTISR 399
           N+P +   + R TC+SP    +A G +     R V+  D+V  +D    V I   + R
Sbjct: 265 NMPSQHILIRRLTCISPTSAMIALGSEMSGGIRDVRAVDNV-AIDTESAVRIKSGVGR 321


>01_01_0453 -
           3361460-3361549,3361660-3361846,3362038-3362139,
           3362239-3362306,3362976-3363175,3363253-3363595,
           3363837-3363893,3364011-3364727,3364805-3365007,
           3365171-3365297
          Length = 697

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 385 EHNYTREIVXLMTTLPVQSNRNTLS 459
           +H  TR+++ L    PV++N+N LS
Sbjct: 148 DHRQTRDLISLFLPAPVRANQNKLS 172


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,486,479
Number of Sequences: 37544
Number of extensions: 356668
Number of successful extensions: 823
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)