Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060294.seq
         (677 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3024| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.040
SB_40869| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.86 
SB_36072| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_50972| Best HMM Match : MH1 (HMM E-Value=7.1)                       29   4.6  
SB_216| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   4.6  
SB_34660| Best HMM Match : AdoHcyase_NAD (HMM E-Value=0.63)            28   6.0  
SB_42106| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   8.0  
SB_31003| Best HMM Match : Antimicrobial11 (HMM E-Value=8)             28   8.0  
SB_23023| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_3024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 806

 Score = 35.5 bits (78), Expect = 0.040
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = +1

Query: 385 EHNYTREIVXLMTTLPVQSNRNTLSHSCTERHAQXFLPPAARFPSKGLTHVHLSTLEQ 558
           EH +T +I  L  T+P     NTL   C +RHA        R P+  L  + +  L+Q
Sbjct: 545 EHAFTNDIEQLPFTIPRLEMLNTLLRECIDRHAPLKPTKMTRPPAPWLKELDIQNLQQ 602


>SB_40869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 412

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = +1

Query: 388 HNYTREIVXLMTTLPVQSNRNTLSHSCTERHAQXFLPPAARFPSKGLTHVHLSTLEQRHG 567
           H +T+ +    T     S+   L+HS T+  A       A   +KGL H H   L  +H 
Sbjct: 215 HGHTKGLAHSHTKGLAHSHTKGLAHSHTKGLAHSHTKGLAHSYTKGLAHSHTKGLAHKHN 274

Query: 568 K 570
           K
Sbjct: 275 K 275



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = +1

Query: 388 HNYTREIVXLMTTLPVQSNRNTLSHSCTERHAQXFLPPAARFPSKGLTHVHLSTLEQRHG 567
           H++T+ +    T     S+   L+HS T+  A   +   A   +KGL H H   L   H 
Sbjct: 111 HSHTKGLAHSHTKGLAHSHTKGLAHSHTKGLAHSQIKGLAHSHTKGLAHSHTKGLAHSHT 170

Query: 568 K 570
           K
Sbjct: 171 K 171



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = +1

Query: 388 HNYTREIVXLMTTLPVQSNRNTLSHSCTERHAQXFLPPAARFPSKGLTHVHLSTLEQRHG 567
           H++T+ +    T     S+   L+HS T+  A       A   +KGL H H+  L   H 
Sbjct: 231 HSHTKGLAHSHTKGLAHSHTKGLAHSYTKGLAHSHTKGLAHKHNKGLAHSHIKGLAHSHI 290

Query: 568 K 570
           K
Sbjct: 291 K 291



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = +1

Query: 388 HNYTREIVXLMTTLPVQSNRNTLSHSCTERHAQXFLPPAARFPSKGLTHVHLSTLEQRHG 567
           H+YT+ +    T      +   L+HS  +  A   +   A   +KGL H H  +L   H 
Sbjct: 255 HSYTKGLAHSHTKGLAHKHNKGLAHSHIKGLAHSHIKGLAYSQTKGLAHSHTKSLAHSHT 314

Query: 568 K 570
           K
Sbjct: 315 K 315



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = +1

Query: 388 HNYTREIVXLMTTLPVQSNRNTLSHSCTERHAQXFLPPAARFPSKGLTHVHLSTLEQRHG 567
           H++ + +    T     S+  +L+HS T+  A   +   A   +KGL H H   L   H 
Sbjct: 287 HSHIKGLAYSQTKGLAHSHTKSLAHSHTKGLAHSHIKGLAHGHTKGLAHSHTKGLAHSHT 346

Query: 568 K 570
           K
Sbjct: 347 K 347



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = +1

Query: 388 HNYTREIVXLMTTLPVQSNRNTLSHSCTERHAQXFLPPAARFPSKGLTHVHLSTLEQRHG 567
           H++T+ +    T     S    L+HS T+  A   +   A   +KGL H H   L   H 
Sbjct: 175 HSHTKGLAHSHTKGLAYSQTQGLAHSHTKGLAHSHIKGLAHGHTKGLAHSHTKGLAHSHT 234

Query: 568 K 570
           K
Sbjct: 235 K 235



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = +1

Query: 388 HNYTREIVXLMTTLPVQSNRNTLSHSCTERHAQXFLPPAARFPSKGLTHVHLSTLEQRHG 567
           H++T+ +    T     S+   L+HS T+  A  +    A   +KGL H H   L   H 
Sbjct: 223 HSHTKGLAHSHTKGLAHSHTKGLAHSHTKGLAHSYTKGLAHSHTKGLAHKHNKGLAHSHI 282

Query: 568 K 570
           K
Sbjct: 283 K 283



 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = +1

Query: 388 HNYTREIVXLMTTLPVQSNRNTLSHSCTERHAQXFLPPAARFPSKGLTHVHLSTLEQRHG 567
           H++T+ +    T     S+   L+HS T+  A       A   +KGL H H+  L   H 
Sbjct: 159 HSHTKGLAHSHTKGLAHSHTKGLAHSHTKGLAYSQTQGLAHSHTKGLAHSHIKGLAHGHT 218

Query: 568 K 570
           K
Sbjct: 219 K 219



 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = +1

Query: 388 HNYTREIVXLMTTLPVQSNRNTLSHSCTERHAQXFLPPAARFPSKGLTHVHLSTLEQRHG 567
           H++T+ +    T     S+   L+HS T+  A       A    KGL H H   L   H 
Sbjct: 103 HSHTKGLAHSHTKGLAHSHTKGLAHSHTKGLAHSHTKGLAHSQIKGLAHSHTKGLAHSHT 162

Query: 568 K 570
           K
Sbjct: 163 K 163



 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = +1

Query: 388 HNYTREIVXLMTTLPVQSNRNTLSHSCTERHAQXFLPPAARFPSKGLTHVHLSTLEQRHG 567
           H++T+ +    T     S    L+HS T+  A       A   +KGL H H   L   H 
Sbjct: 127 HSHTKGLAHSHTKGLAHSQIKGLAHSHTKGLAHSHTKGLAHSHTKGLAHSHTKGLAHSHT 186

Query: 568 K 570
           K
Sbjct: 187 K 187



 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/61 (27%), Positives = 25/61 (40%)
 Frame = +1

Query: 388 HNYTREIVXLMTTLPVQSNRNTLSHSCTERHAQXFLPPAARFPSKGLTHVHLSTLEQRHG 567
           H++T+ +          S+   L+HS T+  A       A   +KGL H H   L   H 
Sbjct: 71  HSHTKGLAHSQIKGLTHSHTKGLAHSHTKGLAHSHTKGLAHSHTKGLAHSHTKGLAHSHT 130

Query: 568 K 570
           K
Sbjct: 131 K 131



 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/61 (27%), Positives = 25/61 (40%)
 Frame = +1

Query: 388 HNYTREIVXLMTTLPVQSNRNTLSHSCTERHAQXFLPPAARFPSKGLTHVHLSTLEQRHG 567
           H++T+ +    T     S+   L+HS  +  A       A   +KGL H H   L   H 
Sbjct: 183 HSHTKGLAYSQTQGLAHSHTKGLAHSHIKGLAHGHTKGLAHSHTKGLAHSHTKGLAHSHT 242

Query: 568 K 570
           K
Sbjct: 243 K 243



 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/61 (27%), Positives = 25/61 (40%)
 Frame = +1

Query: 388 HNYTREIVXLMTTLPVQSNRNTLSHSCTERHAQXFLPPAARFPSKGLTHVHLSTLEQRHG 567
           H++T+ +    T     S    L+HS T+  A   +       +KGL H H   L   H 
Sbjct: 47  HSHTKGLAHSRTKGLAHSQIKGLAHSHTKGLAHSQIKGLTHSHTKGLAHSHTKGLAHSHT 106

Query: 568 K 570
           K
Sbjct: 107 K 107



 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = +1

Query: 388 HNYTREIVXLMTTLPVQSNRNTLSHSCTERHAQXFLPPAARFPSKGLTHVHLSTLEQRHG 567
           H++T+ +    T     S+   L+HS T+  A       A   +KGL H  +  L   H 
Sbjct: 95  HSHTKGLAHSHTKGLAHSHTKGLAHSHTKGLAHSHTKGLAHSHTKGLAHSQIKGLAHSHT 154

Query: 568 K 570
           K
Sbjct: 155 K 155


>SB_36072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 498

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -2

Query: 604 LLTSTATHTRRICHDAVPGYSGVHASAPSTETLL-LVAKXTARGVRYKSAT 455
           +LT  ATHT R  H  +P     H +  S  TLL L A  T R   Y   T
Sbjct: 307 ILTLHATHTTRYAHYTLPTLHATHTTRYSHYTLLTLYATHTTRYSHYTLRT 357



 Score = 29.1 bits (62), Expect = 3.5
 Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 5/88 (5%)
 Frame = -2

Query: 604 LLTSTATHTRRICHDAVPGYSGVHASAPSTETLLLV-AKXTARGVRYKSATAYCD*TVPV 428
           LLT  ATHT R  H  +   +  HA+  S  TLL   A  T R   Y   T +   T   
Sbjct: 339 LLTLYATHTTRYSHYTLRTLNATHATRYSHYTLLTQHATHTTRYSHYTLLTLHATHTTRY 398

Query: 427 K----WSLXSRSHEYNYVLNNGSTELCQ 356
                 +L + +H   Y  +N     C+
Sbjct: 399 SHNTLLTLHAATHTTRYTTHNTRFSHCK 426


>SB_50972| Best HMM Match : MH1 (HMM E-Value=7.1)
          Length = 283

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 551 WNSVMANSAGVCSSAGQQMDSVTNRIIGA 637
           W +++A   G C SA  Q  +++ R IGA
Sbjct: 249 WQTILARQIGTCPSAFNQWHTISARQIGA 277


>SB_216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1315

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 547 YSGVHASAPSTETLLLVAKXTARGVRYKSATAYCD 443
           +SG+H SA S  TL  V +  A  V Y  + A C+
Sbjct: 388 FSGIHLSAASLFTLTAVLRNMAASVGYCLSNAVCN 422


>SB_34660| Best HMM Match : AdoHcyase_NAD (HMM E-Value=0.63)
          Length = 404

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 258 TARILDFGVCCINHRRDRAVC 320
           T  + +FGV C NH +DR  C
Sbjct: 11  TDAVFEFGVGCQNHHKDRTSC 31


>SB_42106| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 929

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +1

Query: 490 FLPPAARFPSKGLTHVHLSTLEQRHGKFGGCV 585
           F PPA R  + G T V   +   R G+F GCV
Sbjct: 745 FPPPARRAATSGYTPVTWRSHISRRGEFYGCV 776


>SB_31003| Best HMM Match : Antimicrobial11 (HMM E-Value=8)
          Length = 397

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 273 REFERSYSVDENDRARFLDRRPVIFQK 193
           R++ RS+S D +   R LDR PV  +K
Sbjct: 47  RDYTRSFSADSSFTVRGLDRTPVAVRK 73


>SB_23023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 505

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 9/14 (64%), Positives = 12/14 (85%), Gaps = 2/14 (14%)
 Frame = -3

Query: 525 PLRR--KPCCWWQK 490
           PLRR  +PCCWW++
Sbjct: 301 PLRRDARPCCWWRQ 314


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,719,321
Number of Sequences: 59808
Number of extensions: 420509
Number of successful extensions: 1039
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)