Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060294.seq
         (677 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle position...    30   1.3  
AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane...    30   1.3  
Z49907-4|CAA90086.1|  454|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle positioning
            protein 4 protein.
          Length = 2104

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = -1

Query: 593  HCYTHPPNLP*RCSRVLRCTCVSPF-DGNLAAGGKNXCAWRSVQECDSVLRLDCT 432
            H   HP  +     +   CTC   F D N +  G+N  ++R V EC+     +C+
Sbjct: 1628 HSDCHPDAICKEVGKGYTCTCPDGFRDLNPSRPGRNCLSYRGVNECEKPELNECS 1682


>AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane
            matrix receptor MUP-4 protein.
          Length = 2104

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = -1

Query: 593  HCYTHPPNLP*RCSRVLRCTCVSPF-DGNLAAGGKNXCAWRSVQECDSVLRLDCT 432
            H   HP  +     +   CTC   F D N +  G+N  ++R V EC+     +C+
Sbjct: 1628 HSDCHPDAICKEVGKGYTCTCPDGFRDLNPSRPGRNCLSYRGVNECEKPELNECS 1682


>Z49907-4|CAA90086.1|  454|Caenorhabditis elegans Hypothetical
           protein B0491.4 protein.
          Length = 454

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 240 SHQRCMTARILDFGVCCINHRRDRAVCRKSKTPTPQ 347
           SH+  ++A++++  VCCI   R  A  R  +  TP+
Sbjct: 365 SHRLFLSAKLINRVVCCIEPERSDAYHRYVEEDTPE 400


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,103,531
Number of Sequences: 27780
Number of extensions: 308891
Number of successful extensions: 625
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)