Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060294.seq
         (677 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.0  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   3.5  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    23   3.5  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   8.2  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 5/6 (83%), Positives = 6/6 (100%)
 Frame = -3

Query: 510 PCCWWQ 493
           PCCWW+
Sbjct: 487 PCCWWK 492


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 5/6 (83%), Positives = 6/6 (100%)
 Frame = -3

Query: 510 PCCWWQ 493
           PCCWW+
Sbjct: 540 PCCWWK 545


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/42 (23%), Positives = 18/42 (42%)
 Frame = -3

Query: 675 RRFHCQSLDSTCNAPIILFVTLSIC*PALLHTPAEFAMTLFQ 550
           + F C +  S     I+L   + +  P   H   E+AM + +
Sbjct: 174 KEFDCHNYMSELTVDILLETAMGVSKPTRDHNAFEYAMAVMK 215


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +3

Query: 108 LGQFCVIYFFLLTTSLLV 161
           +G+  +I FF+LTT L++
Sbjct: 1   MGRITIIRFFVLTTMLMM 18


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 333 SCSSYTQHDRDDD*CNTLQNREF 265
           S S    H++DDD   TL  +EF
Sbjct: 256 SISKLQFHNKDDDLILTLGKKEF 278


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,092
Number of Sequences: 438
Number of extensions: 3848
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)