Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060293.seq
         (679 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P12827 Cluster: Early 25.9 kDa protein; n=5; Nucleopoly...   165   7e-40
UniRef50_O10276 Cluster: Putative early 21.8 kDa protein; n=8; N...    64   3e-09
UniRef50_A6SQ05 Cluster: Putative uncharacterized protein; n=1; ...    34   3.7  
UniRef50_A5GR48 Cluster: LysM-repeat protein; n=1; Synechococcus...    33   4.8  
UniRef50_P12826 Cluster: Early 18.5 kDa protein; n=13; Nucleopol...    33   4.8  
UniRef50_Q3WJ87 Cluster: Luciferase; n=1; Frankia sp. EAN1pec|Re...    33   8.4  

>UniRef50_P12827 Cluster: Early 25.9 kDa protein; n=5;
           Nucleopolyhedrovirus|Rep: Early 25.9 kDa protein -
           Autographa californica nuclear polyhedrosis virus
           (AcMNPV)
          Length = 225

 Score =  165 bits (402), Expect = 7e-40
 Identities = 81/97 (83%), Positives = 82/97 (84%)
 Frame = +3

Query: 216 RKCTEEDDDNAQKISSKPAAHWKYFGVVRCDNTIRTIIGNEKFVRRRLAELCTLYNAEYV 395
           RK          +  SKPA HWKYFGVVRCDNTIRTIIGNEKFVRRRLAELCTLYNAEYV
Sbjct: 101 RKLESAQKKTTHRNISKPA-HWKYFGVVRCDNTIRTIIGNEKFVRRRLAELCTLYNAEYV 159

Query: 396 FCQARADGDKDRQALASLLTAAFGPRVIVXENSRRFE 506
           FCQARADGDKDRQALASLLTAAFG RVIV ENSRRFE
Sbjct: 160 FCQARADGDKDRQALASLLTAAFGSRVIVYENSRRFE 196



 Score =  118 bits (284), Expect = 1e-25
 Identities = 62/83 (74%), Positives = 63/83 (75%)
 Frame = +1

Query: 10  HTITSTTVASVIPKNYQEKRQKICHIISSLRNTHLNFNKIQSVXXXXXXXXXXXXXXXXE 189
           HTITSTTV SVIPKNYQEKRQKICHIISSLRNTHLNFNKIQSV                E
Sbjct: 35  HTITSTTVTSVIPKNYQEKRQKICHIISSLRNTHLNFNKIQSVHKKKLRHLQNLLRKKNE 94

Query: 190 IIAELVRKLESAQKKTTTTHRKL 258
           IIAELVRKLESAQKK  TTHR +
Sbjct: 95  IIAELVRKLESAQKK--TTHRNI 115



 Score = 52.4 bits (120), Expect = 1e-05
 Identities = 24/28 (85%), Positives = 24/28 (85%)
 Frame = +2

Query: 509 INPDEIASGKRXXIKHLQDXSQSDINXY 592
           INPDEIASGKR  IKHLQD SQSDIN Y
Sbjct: 198 INPDEIASGKRLIIKHLQDESQSDINAY 225


>UniRef50_O10276 Cluster: Putative early 21.8 kDa protein; n=8;
           Nucleopolyhedrovirus|Rep: Putative early 21.8 kDa
           protein - Orgyia pseudotsugata multicapsid polyhedrosis
           virus (OpMNPV)
          Length = 197

 Score = 64.1 bits (149), Expect = 3e-09
 Identities = 34/87 (39%), Positives = 50/87 (57%)
 Frame = +3

Query: 282 KYFGVVRCDNTIRTIIGNEKFVRRRLAELCTLYNAEYVFCQARADGDKDRQALASLLTAA 461
           K+F V    N I T  G+E+FVR+R+ ELC     E VFC  RAD  +DR+ +A  L  A
Sbjct: 95  KHFAVTIRKNVIHTTSGSEQFVRQRVLELCA-NGGEQVFCARRADCARDRRRVAEALATA 153

Query: 462 FGPRVIVXENSRRFEL*IRTRLLAANV 542
            G  V+    ++RFE+    +L++A +
Sbjct: 154 LGAGVVASAANKRFEIEDEEKLVSAKL 180


>UniRef50_A6SQ05 Cluster: Putative uncharacterized protein; n=1;
            Botryotinia fuckeliana B05.10|Rep: Putative
            uncharacterized protein - Botryotinia fuckeliana B05.10
          Length = 1203

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 24/101 (23%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
 Frame = -1

Query: 586  VNITLRXILQMFNXXTFAASNLVRIYNSNRRLFSXTMTRGPNAAVSRLASACRSLSPSAR 407
            VN + + + +  N       +L   Y  + R  S T+T  P+  +S L +  ++L+PS+ 
Sbjct: 970  VNYSTKSVARRANMVATVTMDLYDAYKLSTRAIS-TLTFIPHTHISALEAYTQTLAPSST 1028

Query: 406  AWQNTY-SALYNVHSSAKRLLTNFSLPIIVRIVLSHLTTPK 287
            +  +T+ + + ++HS+   +L + S P     ++S +TT +
Sbjct: 1029 SPYSTFHTTILSIHSTIIAMLLSLSRP---TSLISSITTSR 1066


>UniRef50_A5GR48 Cluster: LysM-repeat protein; n=1; Synechococcus
           sp. RCC307|Rep: LysM-repeat protein - Synechococcus sp.
           (strain RCC307)
          Length = 210

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 231 EDDDNAQKISSKPAAHWKYFGVVRCD-NTIRTIIGN 335
           EDDD A      P   W+YFG ++ D N  RT+ G+
Sbjct: 115 EDDDTAVLAKKTPTTDWRYFGPLQVDWNNWRTMAGS 150


>UniRef50_P12826 Cluster: Early 18.5 kDa protein; n=13;
           Nucleopolyhedrovirus|Rep: Early 18.5 kDa protein -
           Autographa californica nuclear polyhedrosis virus
           (AcMNPV)
          Length = 164

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 15/19 (78%), Positives = 16/19 (84%)
 Frame = +3

Query: 564 MXLKVILTXINLKGDXEPN 620
           M LKVILT INLKG+ EPN
Sbjct: 1   MNLKVILTPINLKGEEEPN 19


>UniRef50_Q3WJ87 Cluster: Luciferase; n=1; Frankia sp. EAN1pec|Rep:
           Luciferase - Frankia sp. EAN1pec
          Length = 454

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 390 YVFCQARADGDKDRQALASLLTAAFG 467
           YV+C  R DGD+ R  +AS L  A+G
Sbjct: 356 YVYCSIRPDGDRARDDVASFLGGAYG 381


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 601,874,133
Number of Sequences: 1657284
Number of extensions: 10217962
Number of successful extensions: 28698
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 27889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28692
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52479343733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)