Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060293.seq
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual    30   0.35 
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    25   7.6  

>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -1

Query: 430 RSLSPSARAWQNTYSALYNVHSSAKRLLTNFSLPIIVRIVLSHLT 296
           RSLS     W +  S +YN  SS + ++     P  VR+ L  LT
Sbjct: 343 RSLSNDGNHWGSLSSTIYNPSSSPRTIVYFEKFPWFVRVYLHTLT 387


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 326 NCANCVVTSDHSKVFPMS 273
           NC NC+V  D   V P+S
Sbjct: 194 NCENCLVIDDELNVLPIS 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,552,301
Number of Sequences: 5004
Number of extensions: 44795
Number of successful extensions: 143
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)