Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060293.seq
         (679 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0273 - 2048527-2049297                                           30   2.0  
12_01_0282 - 2088302-2089081                                           28   6.0  
07_01_1079 + 9770444-9772756                                           28   7.9  
01_01_0717 - 5559414-5559435,5559589-5559764,5559876-5559917,556...    28   7.9  

>11_01_0273 - 2048527-2049297
          Length = 256

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
 Frame = -1

Query: 466 PNAAVSRLASACRSLSPSARA------WQNTYSALYNVHSSAKRLLTNFSLPI 326
           P+   + LAS CRS  P+ARA         T+     +H+++   L++F++P+
Sbjct: 104 PSPGAADLASWCRSTPPAARANPTLLLLDGTWKQAKEMHAASLPFLSSFAVPV 156


>12_01_0282 - 2088302-2089081
          Length = 259

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
 Frame = -1

Query: 466 PNAAVSRLASACRSLSPSARA------WQNTYSALYNVHSSAKRLLTNFSLPI 326
           P+   + LAS CRS  P ARA         T+     +H+++   L++F++P+
Sbjct: 105 PSPDAADLASWCRSTPPPARANPTLLLLDGTWKQAKEMHAASLPFLSSFAVPV 157


>07_01_1079 + 9770444-9772756
          Length = 770

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +3

Query: 312 TIRTIIGNEKFVRRRLAELCTLYNAEYVFCQARADGDKDRQALASLL 452
           T   I  NE + R  L  L  +  A YVFC++   GD+     A LL
Sbjct: 103 TAYNIEDNELWTRHALTSLSQITIAIYVFCKSWPGGDRRLLQAAILL 149


>01_01_0717 -
           5559414-5559435,5559589-5559764,5559876-5559917,
           5560039-5560080,5560268-5560370,5560466-5560527,
           5561638-5561719,5567067-5567353,5568085-5568184,
           5568584-5568651,5569819-5569860,5570001-5570032,
           5572616-5572652
          Length = 364

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +1

Query: 13  TITSTTVASVIPKNYQEKRQKICHIISSLRNTH 111
           T  S TVA V  ++YQ++  K+   ISSL+N +
Sbjct: 204 TSNSGTVAEVNAQHYQQESSKLRQQISSLQNAN 236


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,082,163
Number of Sequences: 37544
Number of extensions: 279429
Number of successful extensions: 784
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)