Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060293.seq
         (679 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical p...    32   0.33 
Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical pr...    32   0.33 
AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.      32   0.33 
AF016665-5|ABP57825.1|  649|Caenorhabditis elegans Hypothetical ...    29   4.0  

>Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical
            protein C02F4.1 protein.
          Length = 1781

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -3

Query: 404  LAKHVLGVVQCAQLGQTSPYKLFVANNCANCVVTSDHSKVFPMSS 270
            L++ +LGVV  A +G    Y++F    C N     + S +  +SS
Sbjct: 1540 LSRDILGVVSAAVMGGVKNYEVFFTEACRNICECGEQSVIMELSS 1584


>Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical protein
            C02F4.1 protein.
          Length = 1781

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -3

Query: 404  LAKHVLGVVQCAQLGQTSPYKLFVANNCANCVVTSDHSKVFPMSS 270
            L++ +LGVV  A +G    Y++F    C N     + S +  +SS
Sbjct: 1540 LSRDILGVVSAAVMGGVKNYEVFFTEACRNICECGEQSVIMELSS 1584


>AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.
          Length = 1781

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -3

Query: 404  LAKHVLGVVQCAQLGQTSPYKLFVANNCANCVVTSDHSKVFPMSS 270
            L++ +LGVV  A +G    Y++F    C N     + S +  +SS
Sbjct: 1540 LSRDILGVVSAAVMGGVKNYEVFFTEACRNICECGEQSVIMELSS 1584


>AF016665-5|ABP57825.1|  649|Caenorhabditis elegans Hypothetical
           protein C49D10.4 protein.
          Length = 649

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 138 YRLYLIEIQVRVTQRRYYVAYFLAFFLIIFWN 43
           Y LYLI   V V  + YY   FL +FL I ++
Sbjct: 286 YSLYLIHWPVFVYVKHYYGEQFLVYFLAIIFS 317


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,185,726
Number of Sequences: 27780
Number of extensions: 256698
Number of successful extensions: 753
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)