Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060293.seq
         (679 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g04160.1 68418.m00404 phosphate translocator-related low simi...    28   4.9  
At5g15280.1 68418.m01790 pentatricopeptide (PPR) repeat-containi...    28   6.5  
At1g49890.1 68414.m05593 expressed protein contains Pfam domain,...    27   8.6  

>At5g04160.1 68418.m00404 phosphate translocator-related low
           similarity to SP|P52178 Triose phosphate/phosphate
           translocator, non-green plastid, chloroplast precursor
           (CTPT) {Brassica oleracea},
           phosphoenolpyruvate/phosphate translocator precursor
           [Mesembryanthemum crystallinum] GI:9295275
          Length = 309

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 370 HSSAKRLLTNFSLPIIVRIVLSHLTTPKYFQ*AAGLLLIFCA 245
           H SA  +L+  S+  +  + L HL +   F   A L ++FCA
Sbjct: 49  HMSACAILSYISIVFLKLVPLQHLKSRSQFLKVATLSIVFCA 90


>At5g15280.1 68418.m01790 pentatricopeptide (PPR) repeat-containing
            protein contains Pfam profile PF01535: PPR repeat
          Length = 1227

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 202  LVRKLESAQKKTTTTHRKLVVNRLLIGNTLEW 297
            L+  + S+++K TTT  +  ++RLL GN   W
Sbjct: 1194 LISNMSSSKEKKTTTAGEGFLSRLLSGNGFTW 1225


>At1g49890.1 68414.m05593 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 659

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 469 GPNAAVSRLASACRSLSPSARAWQNTYSAL 380
           G N  +S+  S  R++  SAR WQ T S L
Sbjct: 309 GVNGEISKSKSLPRNIMASARFWQETNSRL 338


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,129,084
Number of Sequences: 28952
Number of extensions: 228388
Number of successful extensions: 580
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)