Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060292.seq
         (687 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-...    88   2e-16
UniRef50_Q960E6 Cluster: SD04748p; n=9; Eukaryota|Rep: SD04748p ...    42   0.011
UniRef50_Q4Q6X7 Cluster: Valyl-tRNA synthetase, putative; n=8; T...    36   0.93 
UniRef50_A6GIB9 Cluster: Putative uncharacterized protein; n=1; ...    35   1.6  
UniRef50_Q17D48 Cluster: Valyl-trna synthetase; n=4; Eukaryota|R...    35   1.6  
UniRef50_A1Y030 Cluster: Putative uncharacterized protein; n=1; ...    34   2.8  
UniRef50_A3WNM4 Cluster: Putative uncharacterized protein; n=2; ...    33   8.6  

>UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=9; cellular organisms|Rep: Endonuclease and
            reverse transcriptase-like protein - Bombyx mori (Silk
            moth)
          Length = 960

 Score = 87.8 bits (208), Expect = 2e-16
 Identities = 43/60 (71%), Positives = 46/60 (76%), Gaps = 2/60 (3%)
 Frame = -2

Query: 680  VAAADYSRNPDHAEAQSXSSPKHLLTDPSDPITLALDAFRFNTRS--RDPGNRTRRTLQK 507
            VAAADYS NPDHA A     P+H+LTDPSDPITLALD F  NTRS  R PGNRTRRT Q+
Sbjct: 896  VAAADYSPNPDHAGASHRRRPRHVLTDPSDPITLALDTFSSNTRSRLRSPGNRTRRTRQR 955


>UniRef50_Q960E6 Cluster: SD04748p; n=9; Eukaryota|Rep: SD04748p -
           Drosophila melanogaster (Fruit fly)
          Length = 1049

 Score = 42.3 bits (95), Expect = 0.011
 Identities = 19/37 (51%), Positives = 25/37 (67%)
 Frame = +3

Query: 345 DTPWRSQELESTVDTVLKMVHLIRSTRVEYNLTNKQK 455
           +T WRS ++ES V+ V K   +IRS R +YNL NK K
Sbjct: 884 NTSWRSTKIESDVEFVQKAARIIRSARSDYNLPNKVK 920


>UniRef50_Q4Q6X7 Cluster: Valyl-tRNA synthetase, putative; n=8;
           Trypanosomatidae|Rep: Valyl-tRNA synthetase, putative -
           Leishmania major
          Length = 967

 Score = 35.9 bits (79), Expect = 0.93
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +3

Query: 354 WRSQELESTVDTVLKMVHLIRSTRVEYNLTNKQK 455
           W S   +S +  +L +VH +RS +  Y+LTNK K
Sbjct: 798 WSSAASDSAMSIILDVVHSVRSIKASYSLTNKHK 831


>UniRef50_A6GIB9 Cluster: Putative uncharacterized protein; n=1;
           Plesiocystis pacifica SIR-1|Rep: Putative
           uncharacterized protein - Plesiocystis pacifica SIR-1
          Length = 354

 Score = 35.1 bits (77), Expect = 1.6
 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +2

Query: 335 PGSGYAVAFAGTRIDSGHGTQNGSPDPFDSRRIQP-DQQTEDPA 463
           PGSG+A A  GT+ D G G    +P+P + R   P D   +DPA
Sbjct: 65  PGSGFAPA-GGTKADPGEGPPPANPEPANPRVEPPVDPWADDPA 107


>UniRef50_Q17D48 Cluster: Valyl-trna synthetase; n=4; Eukaryota|Rep:
           Valyl-trna synthetase - Aedes aegypti (Yellowfever
           mosquito)
          Length = 1048

 Score = 35.1 bits (77), Expect = 1.6
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +3

Query: 354 WRSQELESTVDTVLKMVHLIRSTRVEYNLTNKQK 455
           W +++LE   + V ++  +IRS R +YNL NK K
Sbjct: 886 WHNEQLEKDFEFVQRVAKVIRSARSDYNLPNKTK 919


>UniRef50_A1Y030 Cluster: Putative uncharacterized protein; n=1;
           Spironucleus barkhanus|Rep: Putative uncharacterized
           protein - Spironucleus barkhanus
          Length = 589

 Score = 34.3 bits (75), Expect = 2.8
 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
 Frame = -2

Query: 611 LLTDP---SDPITLALDAFRFNTRSRDPGNRTRRT--LQKFDVHPNLSISPLSFSPDLLF 447
           L++DP   S+ ITL  D F+F    +   N T+    +Q+F +  + S+ PL FS    F
Sbjct: 59  LVSDPVVESEQITL-FDLFQFTPTEQQKANFTKYVSQIQRFSITVDASLQPLDFSSYFNF 117

Query: 446 VGQVVFDASRTDQVNH 399
           +G ++   ++  +V +
Sbjct: 118 IGSLLNHITQLQKVEN 133


>UniRef50_A3WNM4 Cluster: Putative uncharacterized protein; n=2;
           Alteromonadales|Rep: Putative uncharacterized protein -
           Idiomarina baltica OS145
          Length = 129

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +2

Query: 338 GSGYAVAFAGTRIDSGHGTQNGSPDPFDSRRIQPDQQTEDP 460
           GSG       +   SG G+++G+ DPFD  R+ P  + +DP
Sbjct: 82  GSGRGENGPRSTTTSGTGSKDGTGDPFDDFRVNPILREDDP 122


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 641,574,508
Number of Sequences: 1657284
Number of extensions: 12366411
Number of successful extensions: 26594
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 25862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26589
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)