Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060292.seq
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1269 + 35352825-35352888,35353645-35353968,35355062-353551...    30   2.0  
10_02_0195 + 6578384-6578629,6578710-6579300,6586302-6587512,658...    28   6.0  
05_01_0269 + 2062467-2062475,2063252-2063303,2063668-2063743,206...    28   6.0  
04_04_0491 - 25605560-25605684,25605826-25605928,25606026-256075...    28   8.0  
02_02_0720 + 13321852-13322092,13324106-13324200                       28   8.0  

>02_05_1269 +
           35352825-35352888,35353645-35353968,35355062-35355183,
           35355361-35355482,35355651-35355755,35356402-35356765,
           35357181-35357321,35357619-35359109
          Length = 910

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -2

Query: 686 PYVAAADYSRNPDHAEAQSXSSPKHLLTDPSDPITLALD 570
           P  + +DYSR+       S SS +  + DP++P T ++D
Sbjct: 264 PRSSTSDYSRSRSSPRVHSLSSEQFGMQDPAEPTTSSVD 302


>10_02_0195 +
           6578384-6578629,6578710-6579300,6586302-6587512,
           6587593-6587844,6587932-6588042,6588133-6588214,
           6588299-6588382,6588464-6588658
          Length = 923

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = -2

Query: 668 DYSRNPDHAE--AQSXSSPKHLLTDPSDPITLALDAFRFNTRSRDP 537
           D + NP H E   +  +S + L   PSDP  L L   ++     DP
Sbjct: 29  DVTNNPQHKEDAGKVPASSEELWRTPSDPFELELAQLQYERPEDDP 74


>05_01_0269 +
           2062467-2062475,2063252-2063303,2063668-2063743,
           2064156-2064288,2064400-2064578,2065228-2065495,
           2066250-2066342,2066667-2066776,2066887-2066905,
           2066985-2067170
          Length = 374

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/37 (45%), Positives = 19/37 (51%)
 Frame = +3

Query: 342 PDTPWRSQELESTVDTVLKMVHLIRSTRVEYNLTNKQ 452
           P T +    L  T   V  M  L RS +VEY LTNKQ
Sbjct: 283 PPTIFSCLSLSITSIAVKVMFELNRSKKVEYLLTNKQ 319


>04_04_0491 -
           25605560-25605684,25605826-25605928,25606026-25607592,
           25608694-25610198
          Length = 1099

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 27/99 (27%), Positives = 40/99 (40%), Gaps = 8/99 (8%)
 Frame = -2

Query: 683 YVAAADYSRNPDHAEAQSXSSPKHLLTDPSDPITLALDAF-----RFNTRSRDPGNRTRR 519
           YVAA +YSR      +      +HL   PS+  +  +  F     ++   S+ PG RT  
Sbjct: 528 YVAADEYSRIERFTLSNVNGEARHLSLTPSETHSHEIGEFHASNNKYMNESQYPGLRTLL 587

Query: 518 TLQKFDVHPNLSISPLSFSPDLLFVGQV---VFDASRTD 411
            +Q+         S +   P +LF   V     D S TD
Sbjct: 588 VVQRTKHDDGRKTSSIQ-KPSVLFKAFVCLRALDLSNTD 625


>02_02_0720 + 13321852-13322092,13324106-13324200
          Length = 111

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 403 TILSTVSTVDSSSCERHGVS 344
           T++ T+  V SS+C RHG+S
Sbjct: 47  TVVKTLPPVGSSACPRHGIS 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,600,963
Number of Sequences: 37544
Number of extensions: 357783
Number of successful extensions: 852
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)