Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060292.seq
         (687 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42080| Best HMM Match : DUF947 (HMM E-Value=3.2)                    34   0.12 
SB_36735| Best HMM Match : Sin_N (HMM E-Value=0.082)                   30   2.0  
SB_26218| Best HMM Match : Disintegrin (HMM E-Value=0.85)              29   3.5  
SB_32459| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_151| Best HMM Match : zf-CCHC (HMM E-Value=8.9e-05)                 28   6.2  
SB_17758| Best HMM Match : Transformer (HMM E-Value=0.35)              28   8.1  
SB_4999| Best HMM Match : EGF_CA (HMM E-Value=0)                       28   8.1  

>SB_42080| Best HMM Match : DUF947 (HMM E-Value=3.2)
          Length = 274

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +3

Query: 351 PWRSQELESTVDTVLKMVHLIRSTRVEYNL 440
           PWR  ELE  V+ +L +V ++RS + EY +
Sbjct: 33  PWRQAELEEQVEFMLSIVKIVRSIKQEYQV 62


>SB_36735| Best HMM Match : Sin_N (HMM E-Value=0.082)
          Length = 546

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = -3

Query: 421 VERIR*TILSTVSTVDSSSC---ERHGVSGSWEFICIFSF*ELNFPMSLHE 278
           +ER      S  S+V S+SC    + G +  W F C+ +  ++ + +SLHE
Sbjct: 172 LERSNLAAFSVASSVKSTSCTILNQLGPASLWHFECVRNIIKMVYSISLHE 222


>SB_26218| Best HMM Match : Disintegrin (HMM E-Value=0.85)
          Length = 604

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 21/54 (38%), Positives = 28/54 (51%)
 Frame = -3

Query: 520 ELCKSSTCTLT*ASAR*VSRRIFCLLVRLYSTRVERIR*TILSTVSTVDSSSCE 359
           +L KSSTC LT +S   +++   C L R YST       T  ST     SS+C+
Sbjct: 139 DLTKSSTCDLTKSSTCDLTKSSTCDLTRNYST----CDLTKSSTCDLTKSSTCD 188


>SB_32459| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2011

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +2

Query: 335 PGSGYAVAFAGTRIDSGHGTQNGSPDPFDSRRIQPDQQTEDPARNST 475
           PGSG+  A   T   +GH   +GS   F ++ + PD  T DP  + T
Sbjct: 196 PGSGWGSAMGLT---TGH-ISSGSGVNFPTQPVNPDPSTRDPDTSPT 238


>SB_151| Best HMM Match : zf-CCHC (HMM E-Value=8.9e-05)
          Length = 1382

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
 Frame = +3

Query: 345 DTPWRSQEL-ESTVDTVLKMVHLIRSTRVEYNLTNKQ-KIRRETQRADA 485
           D+P+R++   +   DT+L   + +RSTR   +LT K  +++R ++ A A
Sbjct: 20  DSPYRTRNTGKGDTDTLLSYTNPLRSTRTTNSLTQKSGELQRASKLARA 68


>SB_17758| Best HMM Match : Transformer (HMM E-Value=0.35)
          Length = 974

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/49 (34%), Positives = 21/49 (42%)
 Frame = -2

Query: 602 DPSDPITLALDAFRFNTRSRDPGNRTRRTLQKFDVHPNLSISPLSFSPD 456
           DP D +T A D   FNT        T   L  FD  P+L     ++ PD
Sbjct: 815 DPDDTVT-APDPEDFNTAPAPEDFNTAPDLDDFDTAPDLDDFNTAYDPD 862


>SB_4999| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 1054

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 20/64 (31%), Positives = 28/64 (43%)
 Frame = +1

Query: 451  RRSGEKLNGLMLRLGCTSNFCRVRRVRLPGSLLLVLKRKASNARVIGSDGSVRRCLGDDX 630
            R  G  + G  LR G  S   R+  +R  G  +++  R  S  +  G  GSVR       
Sbjct: 971  RDRGALITGSSLRAGRVSQRLRIGFLRKIGIYVVMPLRTQSTRQKKGVLGSVRSSYKLQF 1030

Query: 631  DWAS 642
            DWA+
Sbjct: 1031 DWAN 1034


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,960,449
Number of Sequences: 59808
Number of extensions: 407904
Number of successful extensions: 813
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)