Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060292.seq
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    24   1.2  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    24   1.6  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   3.6  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   4.8  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = +2

Query: 293 RKV*FSK*KYTNKFPGSGYA--VAFAGTRIDSGHGTQ-NGSPDPFDSRRIQPDQQTEDPA 463
           R+  +S  +Y + +  SGY   + F+     S +  +  GSPD F+S   Q     ED A
Sbjct: 365 RRTPYSTPEYDDTYMDSGYTNEIDFSFPDSVSDYPLELKGSPDGFESVTSQYKNIREDDA 424

Query: 464 RN 469
           R+
Sbjct: 425 RH 426


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 17/71 (23%), Positives = 27/71 (38%)
 Frame = -2

Query: 674 AADYSRNPDHAEAQSXSSPKHLLTDPSDPITLALDAFRFNTRSRDPGNRTRRTLQKFDVH 495
           A  Y  +PDH   +S        T   DPI     AF  +          + T+Q+ D  
Sbjct: 371 AISYIHDPDHRYLESFGVMGDSATAMRDPIFYRWHAFVDDVFQEHKNTLPQYTVQQLD-F 429

Query: 494 PNLSISPLSFS 462
           P + I+ +  +
Sbjct: 430 PGIEIADIKLT 440


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 355 HGVSGSWEFICIFSF*ELNFPMS 287
           HG SG W  I I  F +  +P++
Sbjct: 344 HGASGIWGIIAIGLFADNPYPLN 366


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 360 SQELESTVDTVLKMVHLIRSTRVEYNLTNKQKIRRE 467
           S + +ST+ T+   V   R++ +EY L N   I+ +
Sbjct: 402 SPQSQSTIQTLRPQVSPDRTSPMEYRLYNPALIQSQ 437


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,692
Number of Sequences: 438
Number of extensions: 3493
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)