Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060291.seq
(694 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 81 7e-16
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 81 7e-16
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 73 3e-13
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 73 3e-13
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 60 2e-09
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 60 2e-09
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 60 2e-09
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 60 2e-09
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 60 2e-09
Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical pr... 49 3e-06
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 44 8e-05
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 44 8e-05
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 44 8e-05
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 42 4e-04
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 40 0.002
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 40 0.002
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 40 0.002
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 40 0.002
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 40 0.002
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 40 0.002
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 40 0.002
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 40 0.002
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 40 0.002
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 40 0.002
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 40 0.002
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 39 0.003
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 39 0.003
Z49910-5|CAA90120.1| 411|Caenorhabditis elegans Hypothetical pr... 39 0.003
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 38 0.005
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 38 0.005
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 38 0.005
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 38 0.005
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 38 0.009
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 36 0.021
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 36 0.027
AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical ... 36 0.027
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 35 0.048
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 35 0.063
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 35 0.063
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 34 0.11
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 34 0.11
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 33 0.15
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 33 0.15
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 33 0.15
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 33 0.19
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 33 0.26
U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle orienta... 33 0.26
AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein. 33 0.26
Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical p... 31 0.59
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 31 0.78
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 31 0.78
AJ297847-1|CAC16732.1| 619|Caenorhabditis elegans FOG-1 protein... 31 0.78
AJ297846-1|CAC16731.1| 619|Caenorhabditis elegans FOG-1 protein... 31 0.78
AC024810-12|AAK68519.1| 619|Caenorhabditis elegans Feminization... 31 0.78
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 31 1.0
Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 30 1.8
U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya bind... 30 1.8
L07144-9|AAK21441.1| 737|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical p... 29 3.2
Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z19154-9|CAA79552.2| 559|Caenorhabditis elegans Hypothetical pr... 29 3.2
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 29 4.2
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 28 5.5
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 28 5.5
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 28 5.5
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 28 5.5
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 28 5.5
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 28 5.5
U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical p... 28 5.5
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 28 5.5
AC006833-6|AAF60950.1| 491|Caenorhabditis elegans Hypothetical ... 28 5.5
Z69634-9|CAO82013.1| 575|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z69634-8|CAA93452.4| 591|Caenorhabditis elegans Hypothetical pr... 28 7.3
U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (dele... 28 7.3
AC024791-14|AAF60658.1| 767|Caenorhabditis elegans P300/cbp ass... 28 7.3
AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein. 28 7.3
U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical p... 27 9.6
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 27 9.6
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 27 9.6
AF099920-4|AAK29844.2| 363|Caenorhabditis elegans Serpentine re... 27 9.6
AF067619-1|AAC17568.2| 368|Caenorhabditis elegans Hypothetical ... 27 9.6
AC024746-7|AAF60403.1| 246|Caenorhabditis elegans Hypothetical ... 27 9.6
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 81.0 bits (191), Expect = 7e-16
Identities = 45/104 (43%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 436
HF YGE+ VK D GRSRGFAF+ F E +AA E TI K V+ K AK+R
Sbjct: 48 HFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAREQTIKGKSVEVKPAKSR 107
Query: 437 HG-KIFVGGLSSEISDDEIRNFFSELELS*KWRCPLTKQRTKER 565
K+FVGGL S+ S+ ++R+ F + P KQ TK R
Sbjct: 108 ENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQ-TKAR 150
Score = 51.6 bits (118), Expect = 5e-07
Identities = 22/55 (40%), Positives = 32/55 (58%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 675
G + ++E PFDK R+ F FI FE E+ + K+T G +E DVK+A P+
Sbjct: 134 GKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQTKQTFGTRECDVKKAVPQ 188
Score = 48.8 bits (111), Expect = 4e-06
Identities = 26/67 (38%), Positives = 35/67 (52%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 436
HF +G+++ I D T R FAFIVF+ ES DK + + T ++ D KKA
Sbjct: 129 HFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQTKQTFGTRECDVKKA-VP 187
Query: 437 HGKIFVG 457
GK F G
Sbjct: 188 QGKRFPG 194
Score = 37.9 bits (84), Expect = 0.007
Identities = 16/52 (30%), Positives = 30/52 (57%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRA 666
G + + ++ +D+T + +GF F+ F + + L ++TI GK V+VK A
Sbjct: 53 GEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAREQTIKGKSVEVKPA 104
Score = 35.1 bits (77), Expect = 0.048
Identities = 18/47 (38%), Positives = 30/47 (63%)
Frame = +3
Query: 111 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKEL 251
TDN++NGNA ++ N G ++D+K+FVGG+S E +++L
Sbjct: 4 TDNKINGNAS----ETIKENGHSTKG-NEDKKIFVGGISPEVNNEDL 45
Score = 28.3 bits (60), Expect = 5.5
Identities = 9/22 (40%), Positives = 19/22 (86%)
Frame = +2
Query: 443 KIFVGGLSSEISDDEIRNFFSE 508
KIFVGG+S E++++++ + F++
Sbjct: 30 KIFVGGISPEVNNEDLSSHFTQ 51
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 81.0 bits (191), Expect = 7e-16
Identities = 45/104 (43%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 436
HF YGE+ VK D GRSRGFAF+ F E +AA E TI K V+ K AK+R
Sbjct: 48 HFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAREQTIKGKSVEVKPAKSR 107
Query: 437 HG-KIFVGGLSSEISDDEIRNFFSELELS*KWRCPLTKQRTKER 565
K+FVGGL S+ S+ ++R+ F + P KQ TK R
Sbjct: 108 ENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQ-TKAR 150
Score = 51.6 bits (118), Expect = 5e-07
Identities = 22/55 (40%), Positives = 32/55 (58%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 675
G + ++E PFDK R+ F FI FE E+ + K+T G +E DVK+A P+
Sbjct: 134 GKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQTKQTFGTRECDVKKAVPQ 188
Score = 48.8 bits (111), Expect = 4e-06
Identities = 26/67 (38%), Positives = 35/67 (52%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 436
HF +G+++ I D T R FAFIVF+ ES DK + + T ++ D KKA
Sbjct: 129 HFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQTKQTFGTRECDVKKA-VP 187
Query: 437 HGKIFVG 457
GK F G
Sbjct: 188 QGKRFPG 194
Score = 37.9 bits (84), Expect = 0.007
Identities = 16/52 (30%), Positives = 30/52 (57%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRA 666
G + + ++ +D+T + +GF F+ F + + L ++TI GK V+VK A
Sbjct: 53 GEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAREQTIKGKSVEVKPA 104
Score = 35.1 bits (77), Expect = 0.048
Identities = 18/47 (38%), Positives = 30/47 (63%)
Frame = +3
Query: 111 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKEL 251
TDN++NGNA ++ N G ++D+K+FVGG+S E +++L
Sbjct: 4 TDNKINGNAS----ETIKENGHSTKG-NEDKKIFVGGISPEVNNEDL 45
Score = 28.3 bits (60), Expect = 5.5
Identities = 9/22 (40%), Positives = 19/22 (86%)
Frame = +2
Query: 443 KIFVGGLSSEISDDEIRNFFSE 508
KIFVGG+S E++++++ + F++
Sbjct: 30 KIFVGGISPEVNNEDLSSHFTQ 51
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 72.5 bits (170), Expect = 3e-13
Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 9/91 (9%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPK----- 421
+FG +GE+ V DP T R+RGF FI F P S+DKV+ EH ++ KK+DPK
Sbjct: 64 YFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNNREHELDGKKIDPKVAFPK 123
Query: 422 ----KAKARHGKIFVGGLSSEISDDEIRNFF 502
K + K+F+GGLS+ + ++++ +F
Sbjct: 124 RTQAKLVTKTKKVFIGGLSATSTLEDMKQYF 154
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/60 (40%), Positives = 33/60 (55%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 436
+F YG++E + D T R RGF F+ F + E DKV H IN K V+ KKA+ +
Sbjct: 153 YFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVCEIHFHEINGKMVECKKAQPK 212
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/55 (34%), Positives = 33/55 (60%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 675
G + + + FDK + +GF F+TF+S++V + + + I GK V+ K+A PK
Sbjct: 158 GKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVCEIHFHEINGKMVECKKAQPK 212
Score = 35.1 bits (77), Expect = 0.048
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 675
G + E + D + +GF FITF V+ +L + + GK++D K A PK
Sbjct: 69 GEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNNREHELDGKKIDPKVAFPK 123
Score = 34.3 bits (75), Expect = 0.084
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +3
Query: 186 GRDDDRKLFVGGLSWETTDKELR 254
G D K+F+GGLSW+TT + LR
Sbjct: 40 GSQDPGKMFIGGLSWQTTAENLR 62
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 386 EHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFF 502
E +N D GK+F+GGLS + + + +R++F
Sbjct: 27 EARLNADSDDGSHGSQDPGKMFIGGLSWQTTAENLRDYF 65
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 72.5 bits (170), Expect = 3e-13
Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 9/91 (9%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPK----- 421
+FG +GE+ V DP T R+RGF FI F P S+DKV+ EH ++ KK+DPK
Sbjct: 64 YFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNNREHELDGKKIDPKVAFPK 123
Query: 422 ----KAKARHGKIFVGGLSSEISDDEIRNFF 502
K + K+F+GGLS+ + ++++ +F
Sbjct: 124 RTQAKLVTKTKKVFIGGLSATSTLEDMKQYF 154
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/60 (40%), Positives = 33/60 (55%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 436
+F YG++E + D T R RGF F+ F + E DKV H IN K V+ KKA+ +
Sbjct: 153 YFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVCEIHFHEINGKMVECKKAQPK 212
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/55 (34%), Positives = 33/55 (60%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 675
G + + + FDK + +GF F+TF+S++V + + + I GK V+ K+A PK
Sbjct: 158 GKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVCEIHFHEINGKMVECKKAQPK 212
Score = 35.1 bits (77), Expect = 0.048
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 675
G + E + D + +GF FITF V+ +L + + GK++D K A PK
Sbjct: 69 GEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNNREHELDGKKIDPKVAFPK 123
Score = 34.3 bits (75), Expect = 0.084
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +3
Query: 186 GRDDDRKLFVGGLSWETTDKELR 254
G D K+F+GGLSW+TT + LR
Sbjct: 40 GSQDPGKMFIGGLSWQTTAENLR 62
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 386 EHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFF 502
E +N D GK+F+GGLS + + + +R++F
Sbjct: 27 EARLNADSDDGSHGSQDPGKMFIGGLSWQTTAENLRDYF 65
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 59.7 bits (138), Expect = 2e-09
Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 11/113 (9%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 439
+ +GEI I V DP T RSRGF F+ F +D M H I+ K VDPK+A R
Sbjct: 43 YSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRD 102
Query: 440 GK-----------IFVGGLSSEISDDEIRNFFSELELS*KWRCPLTKQRTKER 565
K ++V G+ + ++D + +F++ K L K K R
Sbjct: 103 DKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPR 155
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/57 (36%), Positives = 31/57 (54%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 681
G I ++ + D T + +GF F+TF + V+ +K I GK VD KRA P+ D
Sbjct: 47 GEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDD 103
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 436
+F YG + + D T + RGF F+ F +S+D+ + H +N + D +K ++
Sbjct: 133 YFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSK 192
Score = 36.3 bits (80), Expect = 0.021
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 681
GT+ + E+ DK + +GF F+TF+ V+ + + G DV++ K +
Sbjct: 138 GTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSKDE 194
Score = 32.3 bits (70), Expect = 0.34
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = +2
Query: 443 KIFVGGLSSEISDDEIRNFFSE 508
KIFVGGL+S +DD +R F+S+
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQ 45
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = +3
Query: 135 AENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELR 254
AENG GD+ S E ++ RK+FVGGL+ TTD +R
Sbjct: 8 AENGSGDA----SLEP---ENLRKIFVGGLTSNTTDDLMR 40
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 59.7 bits (138), Expect = 2e-09
Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 11/113 (9%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 439
+ +GEI I V DP T RSRGF F+ F +D M H I+ K VDPK+A R
Sbjct: 5 YSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRD 64
Query: 440 GK-----------IFVGGLSSEISDDEIRNFFSELELS*KWRCPLTKQRTKER 565
K ++V G+ + ++D + +F++ K L K K R
Sbjct: 65 DKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPR 117
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/57 (36%), Positives = 31/57 (54%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 681
G I ++ + D T + +GF F+TF + V+ +K I GK VD KRA P+ D
Sbjct: 9 GEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDD 65
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 436
+F YG + + D T + RGF F+ F +S+D+ + H +N + D +K ++
Sbjct: 95 YFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSK 154
Score = 36.3 bits (80), Expect = 0.021
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 681
GT+ + E+ DK + +GF F+TF+ V+ + + G DV++ K +
Sbjct: 100 GTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSKDE 156
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 59.7 bits (138), Expect = 2e-09
Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 11/113 (9%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 439
+ +GEI I V DP T RSRGF F+ F +D M H I+ K VDPK+A R
Sbjct: 5 YSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRD 64
Query: 440 GK-----------IFVGGLSSEISDDEIRNFFSELELS*KWRCPLTKQRTKER 565
K ++V G+ + ++D + +F++ K L K K R
Sbjct: 65 DKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPR 117
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/57 (36%), Positives = 31/57 (54%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 681
G I ++ + D T + +GF F+TF + V+ +K I GK VD KRA P+ D
Sbjct: 9 GEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDD 65
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 436
+F YG + + D T + RGF F+ F +S+D+ + H +N + D +K ++
Sbjct: 95 YFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSK 154
Score = 36.3 bits (80), Expect = 0.021
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 681
GT+ + E+ DK + +GF F+TF+ V+ + + G DV++ K +
Sbjct: 100 GTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSKDE 156
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 59.7 bits (138), Expect = 2e-09
Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 11/113 (9%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 439
+ +GEI I V DP T RSRGF F+ F +D M H I+ K VDPK+A R
Sbjct: 43 YSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRD 102
Query: 440 GK-----------IFVGGLSSEISDDEIRNFFSELELS*KWRCPLTKQRTKER 565
K ++V G+ + ++D + +F++ K L K K R
Sbjct: 103 DKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPR 155
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/57 (36%), Positives = 31/57 (54%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 681
G I ++ + D T + +GF F+TF + V+ +K I GK VD KRA P+ D
Sbjct: 47 GEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDD 103
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 436
+F YG + + D T + RGF F+ F +S+D+ + H +N + D +K ++
Sbjct: 133 YFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSK 192
Score = 36.3 bits (80), Expect = 0.021
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 681
GT+ + E+ DK + +GF F+TF+ V+ + + G DV++ K +
Sbjct: 138 GTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSKDE 194
Score = 32.3 bits (70), Expect = 0.34
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = +2
Query: 443 KIFVGGLSSEISDDEIRNFFSE 508
KIFVGGL+S +DD +R F+S+
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQ 45
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = +3
Query: 135 AENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELR 254
AENG GD+ S E ++ RK+FVGGL+ TTD +R
Sbjct: 8 AENGSGDA----SLEP---ENLRKIFVGGLTSNTTDDLMR 40
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 59.7 bits (138), Expect = 2e-09
Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 11/113 (9%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 439
+ +GEI I V DP T RSRGF F+ F +D M H I+ K VDPK+A R
Sbjct: 43 YSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRD 102
Query: 440 GK-----------IFVGGLSSEISDDEIRNFFSELELS*KWRCPLTKQRTKER 565
K ++V G+ + ++D + +F++ K L K K R
Sbjct: 103 DKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPR 155
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/57 (36%), Positives = 31/57 (54%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 681
G I ++ + D T + +GF F+TF + V+ +K I GK VD KRA P+ D
Sbjct: 47 GEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDD 103
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 436
+F YG + + D T + RGF F+ F +S+D+ + H +N + D +K ++
Sbjct: 133 YFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSK 192
Score = 36.3 bits (80), Expect = 0.021
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 681
GT+ + E+ DK + +GF F+TF+ V+ + + G DV++ K +
Sbjct: 138 GTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSKDE 194
Score = 32.3 bits (70), Expect = 0.34
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = +2
Query: 443 KIFVGGLSSEISDDEIRNFFSE 508
KIFVGGL+S +DD +R F+S+
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQ 45
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = +3
Query: 135 AENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELR 254
AENG GD+ S E ++ RK+FVGGL+ TTD +R
Sbjct: 8 AENGSGDA----SLEP---ENLRKIFVGGLTSNTTDDLMR 40
>Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical
protein C50B8.1 protein.
Length = 114
Score = 49.2 bits (112), Expect = 3e-06
Identities = 21/54 (38%), Positives = 33/54 (61%)
Frame = +2
Query: 254 YHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 415
++F YG I+S+N+ DP+TG RGFA I F + + +K + H I+ +VD
Sbjct: 43 HYFKRYGSIQSVNMFYDPDTGLHRGFASITFDSKDGANKAIEQRPHVIDGDRVD 96
Score = 35.1 bits (77), Expect = 0.048
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATP 672
G+I V M +D +GF ITF+S+ N ++ I G VDV+ P
Sbjct: 49 GSIQSVNMFYDPDTGLHRGFASITFDSKDGANKAIEQRPHVIDGDRVDVEPYIP 102
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 44.4 bits (100), Expect = 8e-05
Identities = 22/60 (36%), Positives = 30/60 (50%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 436
+F +G + V DPNT SRGF F+ F + S + M H + K VD K+A R
Sbjct: 68 YFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMNDRPHKLGGKTVDSKRAIPR 127
Score = 34.7 bits (76), Expect = 0.063
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 675
G +++ + D +GF F+TF S + +GGK VD KRA P+
Sbjct: 73 GPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMNDRPHKLGGKTVDSKRAIPR 127
Score = 31.5 bits (68), Expect = 0.59
Identities = 10/22 (45%), Positives = 19/22 (86%)
Frame = +2
Query: 443 KIFVGGLSSEISDDEIRNFFSE 508
K+F+GGLS + +D+++ N+FS+
Sbjct: 50 KLFIGGLSHDTTDEQLGNYFSQ 71
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/17 (70%), Positives = 16/17 (94%)
Frame = +3
Query: 201 RKLFVGGLSWETTDKEL 251
RKLF+GGLS +TTD++L
Sbjct: 49 RKLFIGGLSHDTTDEQL 65
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 44.4 bits (100), Expect = 8e-05
Identities = 22/60 (36%), Positives = 30/60 (50%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 436
+F +G + V DPNT SRGF F+ F + S + M H + K VD K+A R
Sbjct: 88 YFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMNDRPHKLGGKTVDSKRAIPR 147
Score = 34.7 bits (76), Expect = 0.063
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 675
G +++ + D +GF F+TF S + +GGK VD KRA P+
Sbjct: 93 GPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMNDRPHKLGGKTVDSKRAIPR 147
Score = 31.5 bits (68), Expect = 0.59
Identities = 10/22 (45%), Positives = 19/22 (86%)
Frame = +2
Query: 443 KIFVGGLSSEISDDEIRNFFSE 508
K+F+GGLS + +D+++ N+FS+
Sbjct: 70 KLFIGGLSHDTTDEQLGNYFSQ 91
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/17 (70%), Positives = 16/17 (94%)
Frame = +3
Query: 201 RKLFVGGLSWETTDKEL 251
RKLF+GGLS +TTD++L
Sbjct: 69 RKLFIGGLSHDTTDEQL 85
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 44.4 bits (100), Expect = 8e-05
Identities = 22/60 (36%), Positives = 30/60 (50%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 436
+F +G + V DPNT SRGF F+ F + S + M H + K VD K+A R
Sbjct: 89 YFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMNDRPHKLGGKTVDSKRAIPR 148
Score = 34.7 bits (76), Expect = 0.063
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 675
G +++ + D +GF F+TF S + +GGK VD KRA P+
Sbjct: 94 GPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMNDRPHKLGGKTVDSKRAIPR 148
Score = 31.5 bits (68), Expect = 0.59
Identities = 10/22 (45%), Positives = 19/22 (86%)
Frame = +2
Query: 443 KIFVGGLSSEISDDEIRNFFSE 508
K+F+GGLS + +D+++ N+FS+
Sbjct: 71 KLFIGGLSHDTTDEQLGNYFSQ 92
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/17 (70%), Positives = 16/17 (94%)
Frame = +3
Query: 201 RKLFVGGLSWETTDKEL 251
RKLF+GGLS +TTD++L
Sbjct: 70 RKLFIGGLSHDTTDEQL 86
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 41.9 bits (94), Expect = 4e-04
Identities = 24/83 (28%), Positives = 42/83 (50%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 439
F YGE+ +IN+ D +TG+S+GFAF+ +K S ++A N + + + H
Sbjct: 58 FSQYGEVMNINLIRDKDTGKSKGFAFLCYKDQRS--TILAV--DNFNGISLHKRMIRVDH 113
Query: 440 GKIFVGGLSSEISDDEIRNFFSE 508
+ + E +DDE + + E
Sbjct: 114 VEEYKVPKYKEDADDETKRLWEE 136
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/38 (50%), Positives = 23/38 (60%)
Frame = +2
Query: 245 GAPYHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 358
G F +YG I S V TD N GRS+GF F+ F+ PE
Sbjct: 332 GLKKQFESYGNITSAKVMTDEN-GRSKGFGFVCFEKPE 368
Score = 34.3 bits (75), Expect = 0.084
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM-AAGEHTINNKKV-------D 415
F A G + SI V D T S G+A++ F+ P ++ M ++ K + D
Sbjct: 52 FSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTMNFEALHGKPMRIMWSQRD 111
Query: 416 PKKAKARHGKIFVGGLSSEISDDEIRNFFS 505
P ++ G IF+ L I + I + FS
Sbjct: 112 PAMRRSGAGNIFIKNLDKVIDNKSIYDTFS 141
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 382
F +G I S V T G+S+GF F+ F PE + + A
Sbjct: 233 FAKFGNITSCEVMTVE--GKSKGFGFVAFANPEEAETAVQA 271
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/38 (50%), Positives = 23/38 (60%)
Frame = +2
Query: 245 GAPYHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 358
G F +YG I S V TD N GRS+GF F+ F+ PE
Sbjct: 272 GLKKQFESYGNITSAKVMTDEN-GRSKGFGFVCFEKPE 308
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 382
F +G I S V T G+S+GF F+ F PE + + A
Sbjct: 173 FAKFGNITSCEVMTVE--GKSKGFGFVAFANPEEAETAVQA 211
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/38 (50%), Positives = 23/38 (60%)
Frame = +2
Query: 245 GAPYHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 358
G F +YG I S V TD N GRS+GF F+ F+ PE
Sbjct: 269 GLKKQFESYGNITSAKVMTDEN-GRSKGFGFVCFEKPE 305
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 382
F +G I S V T G+S+GF F+ F PE + + A
Sbjct: 170 FAKFGNITSCEVMTVE--GKSKGFGFVAFANPEEAETAVQA 208
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/38 (50%), Positives = 23/38 (60%)
Frame = +2
Query: 245 GAPYHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 358
G F +YG I S V TD N GRS+GF F+ F+ PE
Sbjct: 332 GLKKQFESYGNITSAKVMTDEN-GRSKGFGFVCFEKPE 368
Score = 34.3 bits (75), Expect = 0.084
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM-AAGEHTINNKKV-------D 415
F A G + SI V D T S G+A++ F+ P ++ M ++ K + D
Sbjct: 52 FSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTMNFEALHGKPMRIMWSQRD 111
Query: 416 PKKAKARHGKIFVGGLSSEISDDEIRNFFS 505
P ++ G IF+ L I + I + FS
Sbjct: 112 PAMRRSGAGNIFIKNLDKVIDNKSIYDTFS 141
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 382
F +G I S V T G+S+GF F+ F PE + + A
Sbjct: 233 FAKFGNITSCEVMTVE--GKSKGFGFVAFANPEEAETAVQA 271
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 39.5 bits (88), Expect = 0.002
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVF-KAPESID--------KVMAAGEHTINNKKV 412
F YG + S N+ D +T S+G F+ F ++I+ KV+ H + K
Sbjct: 75 FEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQMKPA 134
Query: 413 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSE 508
D + R K+F+G LS + +++ +R F++
Sbjct: 135 DTENRNER--KLFIGQLSKKHNEENLREIFAK 164
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 39.5 bits (88), Expect = 0.002
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVF-KAPESID--------KVMAAGEHTINNKKV 412
F YG + S N+ D +T S+G F+ F ++I+ KV+ H + K
Sbjct: 75 FEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQMKPA 134
Query: 413 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSE 508
D + R K+F+G LS + +++ +R F++
Sbjct: 135 DTENRNER--KLFIGQLSKKHNEENLREIFAK 164
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 39.5 bits (88), Expect = 0.002
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVF-KAPESID--------KVMAAGEHTINNKKV 412
F YG + S N+ D +T S+G F+ F ++I+ KV+ H + K
Sbjct: 75 FEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQMKPA 134
Query: 413 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSE 508
D + R K+F+G LS + +++ +R F++
Sbjct: 135 DTENRNER--KLFIGQLSKKHNEENLREIFAK 164
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 39.5 bits (88), Expect = 0.002
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVF-KAPESID--------KVMAAGEHTINNKKV 412
F YG + S N+ D +T S+G F+ F ++I+ KV+ H + K
Sbjct: 75 FEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQMKPA 134
Query: 413 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSE 508
D + R K+F+G LS + +++ +R F++
Sbjct: 135 DTENRNER--KLFIGQLSKKHNEENLREIFAK 164
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 39.5 bits (88), Expect = 0.002
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVF-KAPESID--------KVMAAGEHTINNKKV 412
F YG + S N+ D +T S+G F+ F ++I+ KV+ H + K
Sbjct: 75 FEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQMKPA 134
Query: 413 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSE 508
D + R K+F+G LS + +++ +R F++
Sbjct: 135 DTENRNER--KLFIGQLSKKHNEENLREIFAK 164
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 39.5 bits (88), Expect = 0.002
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVF-KAPESID--------KVMAAGEHTINNKKV 412
F YG + S N+ D +T S+G F+ F ++I+ KV+ H + K
Sbjct: 75 FEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQMKPA 134
Query: 413 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSE 508
D + R K+F+G LS + +++ +R F++
Sbjct: 135 DTENRNER--KLFIGQLSKKHNEENLREIFAK 164
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 39.5 bits (88), Expect = 0.002
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVF-KAPESID--------KVMAAGEHTINNKKV 412
F YG + S N+ D +T S+G F+ F ++I+ KV+ H + K
Sbjct: 75 FEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQMKPA 134
Query: 413 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSE 508
D + R K+F+G LS + +++ +R F++
Sbjct: 135 DTENRNER--KLFIGQLSKKHNEENLREIFAK 164
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 358
HF ++G I S V D N GRS+GF F+ F+ PE
Sbjct: 362 HFSSFGTITSAKVMVDEN-GRSKGFGFVCFEKPE 394
Score = 31.5 bits (68), Expect = 0.59
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM-AAGEHTINNKKV-------D 415
F G + SI V D + S G+A++ F+ P ++ + I+ + + D
Sbjct: 77 FSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTMNFEVIHGRPMRIMWSQRD 136
Query: 416 PKKAKARHGKIFVGGLSSEISDDEIRNFFS 505
P +A +G IF+ L I + + + FS
Sbjct: 137 PAARRAGNGNIFIKNLDRVIDNKSVYDTFS 166
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 358
HF ++G I S V D N GRS+GF F+ F+ PE
Sbjct: 362 HFSSFGTITSAKVMVDEN-GRSKGFGFVCFEKPE 394
Score = 31.5 bits (68), Expect = 0.59
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM-AAGEHTINNKKV-------D 415
F G + SI V D + S G+A++ F+ P ++ + I+ + + D
Sbjct: 77 FSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTMNFEVIHGRPMRIMWSQRD 136
Query: 416 PKKAKARHGKIFVGGLSSEISDDEIRNFFS 505
P +A +G IF+ L I + + + FS
Sbjct: 137 PAARRAGNGNIFIKNLDRVIDNKSVYDTFS 166
>Z49910-5|CAA90120.1| 411|Caenorhabditis elegans Hypothetical
protein F44G4.4a protein.
Length = 411
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 436
+F G + +K + G S+GF F+ + +KV+A +H I+ ++ D K R
Sbjct: 192 YFEDIGTVVFCEIKRKSD-GNSKGFGFVRMSSVGEQNKVLAIPQHMIDGRRCDVKVPDGR 250
Query: 437 H-------GKIFVGGLSSEISDDEIRNFFSE 508
+IFVG L+ ++ + ++R F +
Sbjct: 251 DKQGRPSISRIFVGRLTDKVDEHQLRKVFGD 281
Score = 34.7 bits (76), Expect = 0.063
Identities = 20/57 (35%), Positives = 29/57 (50%)
Frame = +1
Query: 490 QKLLQ*IGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVK 660
QK + IGT++ E+ K+ KGF F+ S N +L P+ I G+ DVK
Sbjct: 190 QKYFEDIGTVVFCEIK-RKSDGNSKGFGFVRMSSVGEQNKVLAIPQHMIDGRRCDVK 245
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 323 RGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 436
RGFAF+ + E+ +++++ G T+N V A+ R
Sbjct: 302 RGFAFVTLSSAEAAERIVSKGSLTVNGLSVGLSIAQPR 339
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNK--KVDPKK 424
HF G + + ++ D +G +GFA++ F E + +A + + + KVDPK+
Sbjct: 97 HFHGCGSVSRVTIQCDRFSGHPKGFAYVEFTEKEGMQNALAMTDSLLRGRQIKVDPKR 154
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 38.3 bits (85), Expect = 0.005
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 361
F +G I+SIN+ DP TG + FAF+ ++ PE+
Sbjct: 122 FDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEA 155
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 38.3 bits (85), Expect = 0.005
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 361
F +G I+SIN+ DP TG + FAF+ ++ PE+
Sbjct: 122 FDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEA 155
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 38.3 bits (85), Expect = 0.005
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 361
F +G I+SIN+ DP TG + FAF+ ++ PE+
Sbjct: 122 FDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEA 155
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 37.5 bits (83), Expect = 0.009
Identities = 18/53 (33%), Positives = 30/53 (56%)
Frame = +2
Query: 272 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAK 430
G +E++ + D +TG+ +GFAF+ FK S+ +A TI +K D + K
Sbjct: 271 GPVEAVRIVRDKDTGKGKGFAFVNFKQDSSVS--LALSMETIKMEKRDLRITK 321
Score = 34.7 bits (76), Expect = 0.063
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Frame = +2
Query: 335 FIVFKAPESIDKVMAAG-----EHTINNKKVDPKKAK-ARHGKIFVGGLSSEISDDEIRN 496
++ F A ES++K + +H I KV KK + + IFVG L EI++D +
Sbjct: 205 YVKFGAEESVEKALKYNGTKLDDHVIRVDKVGSKKKEFGKDMAIFVGNLPFEITEDALIT 264
Query: 497 FFS 505
FFS
Sbjct: 265 FFS 267
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 36.3 bits (80), Expect = 0.021
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 415
+F +G+IE V TD NT +SRG+ F+ K S ++ I+ +K +
Sbjct: 54 YFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERACKDPNPIIDGRKAN 106
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 35.9 bits (79), Expect = 0.027
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVDPKKAKAR 436
F G+I + + DP +G SRG+AF+ + E + H I+ K
Sbjct: 220 FEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDAAAAAKTYDGHEISTGKPLKVNVSIA 279
Query: 437 HGKIFVGGLSSEISDDEI 490
+ ++F+G + S DEI
Sbjct: 280 NTRLFIGNIPKTKSKDEI 297
>AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical
protein T08B6.5 protein.
Length = 177
Score = 35.9 bits (79), Expect = 0.027
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 412
HF G++ + + D TG + FAF+ F+ ES+ + N+K+
Sbjct: 65 HFAVCGKVARVTIPKDKFTGYQKNFAFVEFQKLESVQLALVLSGTMFRNRKI 116
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 35.1 bits (77), Expect = 0.048
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 376
F + G+I ++ + D TGR RGFAFI F S + +
Sbjct: 25 FSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAV 63
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 34.7 bits (76), Expect = 0.063
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 361
F YGE+ + V D TG +GFA + F PE+
Sbjct: 299 FKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEA 332
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKK 409
F YG+I ++K G+ RGFAF+ F S +A T N K
Sbjct: 23 FEKYGQISDASLKYTKE-GKFRGFAFVGFLDEGSASNALAKSNQTFFNSK 71
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 34.7 bits (76), Expect = 0.063
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVF 346
+F A G + ++ + D TGR RGFAF+ F
Sbjct: 25 YFAAVGHVNNVRIVYDRETGRPRGFAFVEF 54
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 33.9 bits (74), Expect = 0.11
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 364
F A G + + + TD TGRS+G ++ F ES+
Sbjct: 45 FSAVGAVRDVRIITDSRTGRSKGICYVEFWDEESV 79
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 33.9 bits (74), Expect = 0.11
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 364
F A G + + + TD TGRS+G ++ F ES+
Sbjct: 190 FSAVGAVRDVRIITDSRTGRSKGICYVEFWDEESV 224
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 33.5 bits (73), Expect = 0.15
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
Frame = +2
Query: 272 GEIESINVKTDPNTGRSRGFAFIVFKAPESID-KVMAAGEHTINNKKVDPKKAKARH--- 439
G + S+N+ D T +GF F+ F E D + + K + KA A
Sbjct: 37 GPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKASAHEKNM 96
Query: 440 ---GKIFVGGLSSEISDDEIRNFFS 505
IFVG L E+ + + + FS
Sbjct: 97 DVGANIFVGNLDPEVDEKLLYDTFS 121
Score = 31.1 bits (67), Expect = 0.78
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +2
Query: 260 FGAYGEIESI-NVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 382
F A+G I + + D ++G S+GFAFI F + E+ D + A
Sbjct: 120 FSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEA 161
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKR-TIGGKEVDVKRAT 669
G ++ V MP D+ +GF F+ F E+ + +K + GK + V +A+
Sbjct: 37 GPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKAS 90
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 33.5 bits (73), Expect = 0.15
Identities = 20/87 (22%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVF-KAPESIDKVMAAGEHTINNKKVD-----PK 421
F + GEIES + D TG+S G+ F+ + + +++ V + + NK + P
Sbjct: 62 FTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVSSFNGLRLQNKTIKVSYARPS 121
Query: 422 KAKARHGKIFVGGLSSEISDDEIRNFF 502
+ + ++V G+ ++ E+ + F
Sbjct: 122 NDQIKGSNLYVSGIPKSMTLHELESIF 148
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 33.5 bits (73), Expect = 0.15
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
Frame = +2
Query: 272 GEIESINVKTDPNTGRSRGFAFIVFKAPESID-KVMAAGEHTINNKKVDPKKAKARH--- 439
G + S+N+ D T +GF F+ F E D + + K + KA A
Sbjct: 47 GPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKASAHEKNM 106
Query: 440 ---GKIFVGGLSSEISDDEIRNFFS 505
IFVG L E+ + + + FS
Sbjct: 107 DVGANIFVGNLDPEVDEKLLYDTFS 131
Score = 31.1 bits (67), Expect = 0.78
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +2
Query: 260 FGAYGEIESI-NVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 382
F A+G I + + D ++G S+GFAFI F + E+ D + A
Sbjct: 130 FSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEA 171
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKR-TIGGKEVDVKRAT 669
G ++ V MP D+ +GF F+ F E+ + +K + GK + V +A+
Sbjct: 47 GPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKAS 100
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 33.1 bits (72), Expect = 0.19
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 358
FG +GEI ++ D +G SRGF FI F E
Sbjct: 96 FGEFGEINKCDLVYDRPSGNSRGFGFIYFNLIE 128
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 32.7 bits (71), Expect = 0.26
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVF 346
+F G + ++ + D TGR RGFAF+ F
Sbjct: 23 YFSQAGNVSNVRIVCDRETGRPRGFAFVEF 52
>U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle
orientation defective protein4 protein.
Length = 351
Score = 32.7 bits (71), Expect = 0.26
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA-GEHTINNKKVDPKKAKAR 436
F AYG + S+ + T N S+GF F+ + ES +K AA E + + ++ ++A
Sbjct: 71 FFAYGRVLSVEIVT--NDRGSKGFGFVTLDSIESCEKARAALHESHVQGRIIEVRRATPT 128
Query: 437 HGKI 448
K+
Sbjct: 129 RRKL 132
>AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein.
Length = 351
Score = 32.7 bits (71), Expect = 0.26
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA-GEHTINNKKVDPKKAKAR 436
F AYG + S+ + T N S+GF F+ + ES +K AA E + + ++ ++A
Sbjct: 71 FFAYGRVLSVEIVT--NDRGSKGFGFVTLDSIESCEKARAALHESHVQGRIIEVRRATPT 128
Query: 437 HGKI 448
K+
Sbjct: 129 RRKL 132
>Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical
protein B0035.12 protein.
Length = 836
Score = 31.5 bits (68), Expect = 0.59
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 180 APGRDDDRKLFVGGLSWETTDKELRIILE 266
APG +D R +FV L + TT+ E+R +E
Sbjct: 586 APGTEDARTIFVSNLDFTTTEDEIRQAIE 614
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 31.1 bits (67), Expect = 0.78
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 16/98 (16%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVF----------------KAPESIDKVMAAGEH 391
F +G+I + D TG +G AF+ + K +++ M
Sbjct: 49 FEQFGKIYEFTILKDKYTGMHKGCAFLTYCHRDSAVRCQATLHDQKTLPGMNRAMQVKPA 108
Query: 392 TINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFS 505
+++ PK K K+F+G LS + S+DE+R F+
Sbjct: 109 DTDSRPASPKD-KMDDKKLFIGMLSKQQSEDEVRALFA 145
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 162 DHNSAEAPGRDDDRKLFVGGLSWETTDKELRII 260
D A + DD+KLF+G LS + ++ E+R +
Sbjct: 111 DSRPASPKDKMDDKKLFIGMLSKQQSEDEVRAL 143
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 31.1 bits (67), Expect = 0.78
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 16/98 (16%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVF----------------KAPESIDKVMAAGEH 391
F +G+I + D TG +G AF+ + K +++ M
Sbjct: 49 FEQFGKIYEFTILKDKYTGMHKGCAFLTYCHRDSAVRCQATLHDQKTLPGMNRAMQVKPA 108
Query: 392 TINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFS 505
+++ PK K K+F+G LS + S+DE+R F+
Sbjct: 109 DTDSRPASPKD-KMDDKKLFIGMLSKQQSEDEVRALFA 145
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 162 DHNSAEAPGRDDDRKLFVGGLSWETTDKELRII 260
D A + DD+KLF+G LS + ++ E+R +
Sbjct: 111 DSRPASPKDKMDDKKLFIGMLSKQQSEDEVRAL 143
>AJ297847-1|CAC16732.1| 619|Caenorhabditis elegans FOG-1 protein
protein.
Length = 619
Score = 31.1 bits (67), Expect = 0.78
Identities = 18/85 (21%), Positives = 35/85 (41%)
Frame = +2
Query: 254 YHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKA 433
+HFG++ + + N + R K+ + + A HT+ + +
Sbjct: 143 HHFGSFDSMSAYNFHNNNQQQRREAHVSRDGKSFDQGNIYTAEDVHTVVKNHRNENNQRV 202
Query: 434 RHGKIFVGGLSSEISDDEIRNFFSE 508
K+FVGG+S ++ I FF +
Sbjct: 203 VSNKVFVGGISHMMNRKIINKFFGQ 227
>AJ297846-1|CAC16731.1| 619|Caenorhabditis elegans FOG-1 protein
protein.
Length = 619
Score = 31.1 bits (67), Expect = 0.78
Identities = 18/85 (21%), Positives = 35/85 (41%)
Frame = +2
Query: 254 YHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKA 433
+HFG++ + + N + R K+ + + A HT+ + +
Sbjct: 143 HHFGSFDSMSAYNFHNNNQQQRREAHVSRDGKSFDQGNIYTAEDVHTVVKNHRNENNQRV 202
Query: 434 RHGKIFVGGLSSEISDDEIRNFFSE 508
K+FVGG+S ++ I FF +
Sbjct: 203 VSNKVFVGGISHMMNRKIINKFFGQ 227
>AC024810-12|AAK68519.1| 619|Caenorhabditis elegans Feminization of
germline protein1, isoform b protein.
Length = 619
Score = 31.1 bits (67), Expect = 0.78
Identities = 18/85 (21%), Positives = 35/85 (41%)
Frame = +2
Query: 254 YHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKA 433
+HFG++ + + N + R K+ + + A HT+ + +
Sbjct: 143 HHFGSFDSMSAYNFHNNNQQQRREAHVSRDGKSFDQGNIYTAEDVHTVVKNHRNENNQRV 202
Query: 434 RHGKIFVGGLSSEISDDEIRNFFSE 508
K+FVGG+S ++ I FF +
Sbjct: 203 VSNKVFVGGISHMMNRKIINKFFGQ 227
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 379
FG G + I + D TG +GFAF+ F++ + + +A
Sbjct: 196 FGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIA 235
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 508 IGTILEVEMPFDKTKNQRKGFCFITFES 591
IG ++ + + DK KGF F+TFES
Sbjct: 199 IGRVIRIFIARDKVTGLPKGFAFVTFES 226
>Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical
protein T12D8.2 protein.
Length = 207
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 523 EVEMPFDKTKNQRKGFCFITFESEQVVNDLLK-TPKRTIGGKEVDVKRA 666
++ + D+ KGF ++TFE+EQ +N + G + + V RA
Sbjct: 40 DIHLVHDRDSGSFKGFAYVTFENEQQMNTAISGLNGADFGNRVLKVNRA 88
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI---NNKKVD 415
F YG+I++I++ D TG +G+A + ++ + ++ + T N KVD
Sbjct: 75 FSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEANEAIDQSNDTDLLGQNVKVD 129
>U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya binding
family protein 2 protein.
Length = 422
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +2
Query: 443 KIFVGGLSSEISDDEIRNFFS 505
K+FVGGL S + + +I NFFS
Sbjct: 89 KVFVGGLPSCVKESDILNFFS 109
>L07144-9|AAK21441.1| 737|Caenorhabditis elegans Hypothetical
protein R05D3.2 protein.
Length = 737
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -3
Query: 629 LLGVLSKSFTTCSDSNVMKQKPFLWFFVLSKGISTSKI 516
L+G L S+ ++ PF +FF+ S+G STSKI
Sbjct: 156 LIGALWNYVFVLSNVSLFVLLPFSYFFIESQGFSTSKI 193
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 29.1 bits (62), Expect = 3.2
Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 22/104 (21%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA------GEHTI-------- 397
F +GE+ V D T +S+G+ F+ F ++ + +A G+ +
Sbjct: 155 FTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGMNGKWIGKRAVRTNWAARK 214
Query: 398 NNKKVDPK--------KAKARHGKIFVGGLSSEISDDEIRNFFS 505
N+++ K KA + ++VG +S + +D ++R+ FS
Sbjct: 215 NSEENRDKLTFEQVFNSTKADNTSVYVGNISQQTTDADLRDLFS 258
>Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical
protein F10F2.1 protein.
Length = 2507
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 81 NNDNFAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRK 206
N++N + + +N NG NGG + N E+ G D + +
Sbjct: 1323 NSENVNSETSPENGSNGKLANGGDNLSIKNGIESNGNDGEEE 1364
>Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical protein
F10F2.1 protein.
Length = 2507
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 81 NNDNFAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRK 206
N++N + + +N NG NGG + N E+ G D + +
Sbjct: 1323 NSENVNSETSPENGSNGKLANGGDNLSIKNGIESNGNDGEEE 1364
>Z19154-9|CAA79552.2| 559|Caenorhabditis elegans Hypothetical
protein C40H1.1 protein.
Length = 559
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Frame = +2
Query: 263 GAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG----EHTINNKKVDPK 421
G YG++ + + DP +G A + F ++ + ++ H NNK+V+ K
Sbjct: 387 GHYGKVSYVGIDIDPELKYPKGAARVTFSTSQAFVRAISGRFVQVNHAENNKRVEIK 443
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Frame = +3
Query: 168 NSAEAPGRDDD--RKLFVGGLSWETTDKELR 254
N AE P +D R LFVG +++ET++ +LR
Sbjct: 91 NPAENPRASEDPYRTLFVGRINYETSESKLR 121
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +2
Query: 446 IFVGGLSSEISDDEIRNFFSE 508
+FVG +S ++S+D IR+ FS+
Sbjct: 20 VFVGNISYDVSEDTIRSIFSK 40
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 434 RHGKIFVGGLSSEISDDEIRNFF 502
RH +FVG LSSE+ + ++R F
Sbjct: 20 RHFHVFVGDLSSEVDNQKLREAF 42
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 434 RHGKIFVGGLSSEISDDEIRNFF 502
RH +FVG LSSE+ + ++R F
Sbjct: 30 RHFHVFVGDLSSEVDNQKLREAF 52
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 434 RHGKIFVGGLSSEISDDEIRNFF 502
RH +FVG LSSE+ + ++R F
Sbjct: 133 RHFHVFVGDLSSEVDNQKLREAF 155
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 434 RHGKIFVGGLSSEISDDEIRNFF 502
RH +FVG LSSE+ + ++R F
Sbjct: 101 RHFHVFVGDLSSEVDNQKLREAF 123
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 416 PKKAKARHGKIFVGGLSSEISDDEIRNFFS 505
PKK ++FVG L +E+ + E++ FS
Sbjct: 108 PKKKFTGRCRLFVGNLPNEVKETELKELFS 137
>U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical
protein F25B5.7b protein.
Length = 165
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 416 PKKAKARHGKIFVGGLSSEISDDEIRNFFS 505
PKK ++FVG L +E+ + E++ FS
Sbjct: 108 PKKKFTGRCRLFVGNLPNEVKETELKELFS 137
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 416 PKKAKARHGKIFVGGLSSEISDDEIRNFFS 505
PKK ++FVG L +E+ + E++ FS
Sbjct: 108 PKKKFTGRCRLFVGNLPNEVKETELKELFS 137
>AC006833-6|AAF60950.1| 491|Caenorhabditis elegans Hypothetical
protein ZK616.1 protein.
Length = 491
Score = 28.3 bits (60), Expect = 5.5
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = +2
Query: 443 KIFVGGLSSEISDDEIRNFFSEL 511
+++VGG S+ +S ++IRN ++L
Sbjct: 10 RLYVGGFSTNLSSEQIRNLITQL 32
>Z69634-9|CAO82013.1| 575|Caenorhabditis elegans Hypothetical
protein B0001.3b protein.
Length = 575
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 102 DITTDNQLNGNAENGGGDSQDHNSAEAPGRDDD 200
D+ N+ N ++ + GGDS + E DDD
Sbjct: 416 DVAPGNRRNNSSSSAGGDSHLRGTVEFSSSDDD 448
>Z69634-8|CAA93452.4| 591|Caenorhabditis elegans Hypothetical
protein B0001.3a protein.
Length = 591
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 102 DITTDNQLNGNAENGGGDSQDHNSAEAPGRDDD 200
D+ N+ N ++ + GGDS + E DDD
Sbjct: 432 DVAPGNRRNNSSSSAGGDSHLRGTVEFSSSDDD 464
>U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (deleted
in azoospermia)homolog protein 1 protein.
Length = 498
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +1
Query: 556 QRKGFCFITFESEQVVNDLLK-TPKR 630
Q KG+ FITFE+E ++ K TPK+
Sbjct: 104 QSKGYGFITFETEDQAEEIRKLTPKQ 129
>AC024791-14|AAF60658.1| 767|Caenorhabditis elegans P300/cbp
associated factor homologprotein 1 protein.
Length = 767
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +2
Query: 320 SRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 439
SRGF IVF A ++++V G H +N+ K K K H
Sbjct: 487 SRGFVEIVFCAITAMEQVKGYGTHLMNHCKDYMIKNKIYH 526
>AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein.
Length = 499
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +1
Query: 556 QRKGFCFITFESEQVVNDLLK-TPKR 630
Q KG+ FITFE+E ++ K TPK+
Sbjct: 105 QSKGYGFITFETEDQAEEIRKLTPKQ 130
>U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical
protein EEED8.4 protein.
Length = 191
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 376
HF G+I + D T + + FA+I F SI+ +
Sbjct: 74 HFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENAL 113
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVF 346
F YG+I +++ D + +S+GF F+ F
Sbjct: 39 FERYGDIGDVHIPRDKYSRQSKGFGFVRF 67
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVF 346
F YG+I +++ D + +S+GF F+ F
Sbjct: 39 FERYGDIGDVHIPRDKYSRQSKGFGFVRF 67
>AF099920-4|AAK29844.2| 363|Caenorhabditis elegans Serpentine
receptor, class w protein95 protein.
Length = 363
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -1
Query: 160 CESPPPFSAFPLSWLSVVIS 101
CE P P S F + W++VVI+
Sbjct: 107 CEPPAPLSFFYMYWINVVIN 126
>AF067619-1|AAC17568.2| 368|Caenorhabditis elegans Hypothetical
protein K03E5.3 protein.
Length = 368
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 297 RQIQTQADHEGLPSLCLR 350
+ I+T D EG+PS CLR
Sbjct: 74 KMIRTDRDEEGIPSTCLR 91
>AC024746-7|AAF60403.1| 246|Caenorhabditis elegans Hypothetical
protein Y110A2AL.5 protein.
Length = 246
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = -3
Query: 239 CGLPAQPTNKKFSVVIASWGLSTVMILRITATVLCISIKLVVGG 108
C P QP + S+V+ W + + R A CI L + G
Sbjct: 143 CPAPGQPFRRTESLVVCIWTFNETVATREEAKTFCIGKGLKLTG 186
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,379,675
Number of Sequences: 27780
Number of extensions: 342589
Number of successful extensions: 1282
Number of sequences better than 10.0: 84
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1274
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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