Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060291.seq
(694 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 71 1e-12
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 71 1e-12
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 63 1e-10
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 59 2e-09
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 57 1e-08
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 53 2e-07
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 53 2e-07
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 52 4e-07
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 52 4e-07
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 52 4e-07
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 51 8e-07
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 51 8e-07
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 50 1e-06
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 50 1e-06
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 48 8e-06
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 41 2e-05
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 46 2e-05
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 45 6e-05
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 44 7e-05
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 44 1e-04
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 43 2e-04
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 43 2e-04
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 43 2e-04
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 42 5e-04
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 42 5e-04
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 42 5e-04
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 41 7e-04
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 40 0.001
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 31 0.001
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 40 0.002
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 40 0.002
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 39 0.003
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 39 0.003
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 39 0.003
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 39 0.003
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 38 0.005
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 38 0.005
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 38 0.005
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 38 0.005
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 38 0.005
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 38 0.005
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 38 0.006
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 38 0.008
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 38 0.008
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 38 0.008
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 38 0.008
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 38 0.008
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 38 0.008
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 37 0.011
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 37 0.015
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 37 0.015
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 37 0.015
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 37 0.015
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 37 0.015
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 36 0.019
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 36 0.019
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 36 0.019
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 36 0.019
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 36 0.019
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 36 0.019
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 36 0.019
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 36 0.019
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 36 0.019
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 36 0.019
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 36 0.019
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 36 0.025
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 36 0.025
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 36 0.025
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 36 0.034
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 36 0.034
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 36 0.034
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 36 0.034
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 36 0.034
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 36 0.034
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 35 0.045
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 35 0.045
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 35 0.045
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 35 0.045
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 35 0.045
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 35 0.045
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 35 0.045
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 35 0.059
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 35 0.059
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 35 0.059
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 35 0.059
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 35 0.059
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 34 0.078
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 34 0.078
At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing ... 34 0.10
At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing ... 34 0.10
At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing ... 34 0.10
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 34 0.10
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 34 0.10
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 33 0.14
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 33 0.14
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 33 0.14
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 33 0.14
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 33 0.14
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 33 0.14
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 33 0.14
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 33 0.18
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 33 0.18
At1g72800.1 68414.m08416 nuM1-related contains similarity with n... 33 0.18
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 33 0.24
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 33 0.24
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 32 0.31
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 32 0.41
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 32 0.41
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 32 0.41
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 32 0.41
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 32 0.41
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 31 0.55
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 31 0.55
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 31 0.73
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 31 0.73
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 31 0.73
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 31 0.73
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 31 0.73
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 31 0.96
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 31 0.96
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 31 0.96
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 30 1.3
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 30 1.3
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 30 1.3
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 30 1.3
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 30 1.7
At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing ... 30 1.7
At2g39260.1 68415.m04821 MIF4G domain-containing protein similar... 30 1.7
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 30 1.7
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 29 2.2
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 29 2.2
At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein ... 29 2.2
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 29 2.2
At3g18810.1 68416.m02389 protein kinase family protein contains ... 29 2.2
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 29 2.2
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 29 2.2
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 29 2.9
At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein ... 29 3.9
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 29 3.9
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 28 5.1
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 28 5.1
At3g30820.1 68416.m03953 hypothetical protein 28 5.1
At2g47390.1 68415.m05915 expressed protein 28 5.1
At5g22830.1 68418.m02669 magnesium transporter CorA-like family ... 28 6.8
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 28 6.8
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 28 6.8
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 28 6.8
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 28 6.8
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 28 6.8
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 28 6.8
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 28 6.8
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 27 8.9
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 27 8.9
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 27 8.9
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 27 8.9
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 27 8.9
At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing ... 27 8.9
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 27 8.9
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 27 8.9
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 27 8.9
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 70.5 bits (165), Expect = 1e-12
Identities = 39/95 (41%), Positives = 56/95 (58%), Gaps = 11/95 (11%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA--K 430
HFG YGEI + D +TG+ RGF FI F P +DKV+ H IN K+V+ K+ K
Sbjct: 38 HFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVI-EDTHVINGKQVEIKRTIPK 96
Query: 431 ARHG---------KIFVGGLSSEISDDEIRNFFSE 508
G KIFVGG+ S +++DE+++FF++
Sbjct: 97 GAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAK 131
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG------EHTINNKKVDPK 421
F YG + V D T RSRGF F++F + E +D++++ G + + KK +PK
Sbjct: 129 FAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKAEPK 188
Query: 422 KAKAR 436
K+ R
Sbjct: 189 KSLNR 193
Score = 41.1 bits (92), Expect = 7e-04
Identities = 20/56 (35%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL-KTPKRTIGGKEVDVKRATPK 675
G ++E ++ D N+ +GF F+ F+SE+VV++LL K + +V++K+A PK
Sbjct: 133 GNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKAEPK 188
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/61 (37%), Positives = 34/61 (55%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPDGPG 690
G I + + D+ Q +GF FITF VV+ +++ I GK+V++KR PK G G
Sbjct: 43 GEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE-DTHVINGKQVEIKRTIPK--GAG 99
Query: 691 G 693
G
Sbjct: 100 G 100
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 70.5 bits (165), Expect = 1e-12
Identities = 39/95 (41%), Positives = 56/95 (58%), Gaps = 11/95 (11%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA--K 430
HFG YGEI + D +TG+ RGF FI F P +DKV+ H IN K+V+ K+ K
Sbjct: 38 HFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVI-EDTHVINGKQVEIKRTIPK 96
Query: 431 ARHG---------KIFVGGLSSEISDDEIRNFFSE 508
G KIFVGG+ S +++DE+++FF++
Sbjct: 97 GAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAK 131
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/61 (37%), Positives = 34/61 (55%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPDGPG 690
G I + + D+ Q +GF FITF VV+ +++ I GK+V++KR PK G G
Sbjct: 43 GEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE-DTHVINGKQVEIKRTIPK--GAG 99
Query: 691 G 693
G
Sbjct: 100 G 100
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 385
F YG + V D T RSRGF F++F + E +D++++ G
Sbjct: 129 FAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKG 170
Score = 34.3 bits (75), Expect = 0.078
Identities = 14/35 (40%), Positives = 25/35 (71%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 615
G ++E ++ D N+ +GF F+ F+SE+VV++LL
Sbjct: 133 GNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELL 167
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 63.3 bits (147), Expect = 1e-10
Identities = 35/93 (37%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 436
HFG YGEI + D TG+ RGF F+ + +DKV+ H I K+V+ K+ R
Sbjct: 61 HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVI-QDNHIIIGKQVEIKRTIPR 119
Query: 437 HG---------KIFVGGLSSEISDDEIRNFFSE 508
KIFVGG+ S + DDE + FF +
Sbjct: 120 GSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQ 152
Score = 45.6 bits (103), Expect = 3e-05
Identities = 19/60 (31%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEH-TINNKKVDPKKAKAR 436
F +GE++ + D +TGRSRGF F+ +++ + +D ++A G ++ +V+ KKA+ +
Sbjct: 150 FMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPK 209
Score = 41.9 bits (94), Expect = 4e-04
Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKR-TIGGKEVDVKRATPK 675
G + E ++ D + + +GF F+T+ESE +V+ LL R + G +V++K+A PK
Sbjct: 154 GELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPK 209
Score = 35.1 bits (77), Expect = 0.045
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 675
G I + + D+ Q +GF F+T+ VV+ +++ I GK+V++KR P+
Sbjct: 66 GEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQ-DNHIIIGKQVEIKRTIPR 119
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +3
Query: 99 QDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKE 248
+D D + + + E+ SQ H+ G D K+FVGGL+ ETT E
Sbjct: 11 EDEIHDPKPSEDIEDDDDKSQPHSGG---GVDSAGKIFVGGLARETTSAE 57
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 59.3 bits (137), Expect = 2e-09
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 12/94 (12%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPK----- 421
+FG +GE+ + TD TG RGF F+ F +KV+ +H I+++KVD K
Sbjct: 85 YFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE-DHVIDDRKVDLKRTLPR 143
Query: 422 -------KAKARHGKIFVGGLSSEISDDEIRNFF 502
KA ++ KIFVGGL + +DE++N+F
Sbjct: 144 GDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYF 177
Score = 52.4 bits (120), Expect = 3e-07
Identities = 22/61 (36%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVDPKKAKA 433
+F YG+I + D +TGRSRGF F+ F+ +S+D++ + G+ H + +K+V+ K+A+
Sbjct: 176 YFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEP 235
Query: 434 R 436
+
Sbjct: 236 K 236
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDVKRATPKPDG 684
G I+E ++ +D + +GF F+TF++E V+ L K +G K+V++KRA PK G
Sbjct: 181 GDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPKRTG 239
Score = 33.1 bits (72), Expect = 0.18
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Frame = +3
Query: 108 TTDNQLNGNA--ENGG---GDSQDHNSAEAPGRDDDRKLFVGGLSWETT 239
T D++ NG A + GG S DH + + KLFVGG+SWETT
Sbjct: 31 TFDDRRNGGAAVDTGGIQMKHSVDHRHSSS-SMSSPGKLFVGGVSWETT 78
Score = 32.7 bits (71), Expect = 0.24
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 681
G +++ + D+ +GF F+TF V +L+ I ++VD+KR P+ D
Sbjct: 90 GEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLE-EDHVIDDRKVDLKRTLPRGD 145
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 57.2 bits (132), Expect = 1e-08
Identities = 24/61 (39%), Positives = 39/61 (63%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPDGPG 690
G + +V + +D+ N+ +GF F++F+SE V+ +L + GK+V+VKRA PK PG
Sbjct: 134 GPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKDANPG 193
Query: 691 G 693
G
Sbjct: 194 G 194
Score = 56.4 bits (130), Expect = 2e-08
Identities = 36/107 (33%), Positives = 53/107 (49%), Gaps = 25/107 (23%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 436
HF YGE+ V D TGR RGF F++F P +D+V+ +H+I+ ++VD K+A +R
Sbjct: 25 HFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE-KHSIDTREVDVKRAMSR 83
Query: 437 H-------------------------GKIFVGGLSSEISDDEIRNFF 502
KIFVGGL ++D+E R +F
Sbjct: 84 EEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYF 130
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/70 (30%), Positives = 37/70 (52%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 436
+F YG + + + D T R RGF F+ F + +++D V+ H ++ K+V+ K+A +
Sbjct: 129 YFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPK 188
Query: 437 HGKIFVGGLS 466
GG S
Sbjct: 189 DANPGGGGRS 198
Score = 33.9 bits (74), Expect = 0.10
Identities = 18/57 (31%), Positives = 32/57 (56%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 681
G + + + DK + +GF F+ F V++ +L+ K +I +EVDVKRA + +
Sbjct: 30 GEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE-KHSIDTREVDVKRAMSREE 85
Score = 33.1 bits (72), Expect = 0.18
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +3
Query: 195 DDRKLFVGGLSWETTDKELR 254
D KLFVGG+SWET + +LR
Sbjct: 4 DQGKLFVGGISWETDEDKLR 23
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +2
Query: 440 GKIFVGGLSSEISDDEIRNFFS 505
GK+FVGG+S E +D++R F+
Sbjct: 6 GKLFVGGISWETDEDKLREHFT 27
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 53.2 bits (122), Expect = 2e-07
Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 28/112 (25%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 436
+FG YG++ + D TGR+RGF FIVF P ++V+ +H I+ + V+ KKA R
Sbjct: 34 YFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVI-MDKHIIDGRTVEAKKAVPR 92
Query: 437 -------------------HG---------KIFVGGLSSEISDDEIRNFFSE 508
HG KIFVGGL S I++ E +N+F +
Sbjct: 93 DDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSSITEAEFKNYFDQ 144
Score = 50.8 bits (116), Expect = 8e-07
Identities = 24/57 (42%), Positives = 33/57 (57%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 427
+F +G I + V D NT R RGF FI F + ES+D V+ H +N K V+ K+A
Sbjct: 141 YFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVKRA 197
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/55 (43%), Positives = 35/55 (63%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 675
GTI +V + +D + +GF FITF+SE+ V+ +L + GK V+VKRA PK
Sbjct: 146 GTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVKRAVPK 200
Score = 36.7 bits (81), Expect = 0.015
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 681
G ++E + D+T + +GF FI F V ++ K I G+ V+ K+A P+ D
Sbjct: 39 GDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVI-MDKHIIDGRTVEAKKAVPRDD 94
Score = 28.7 bits (61), Expect = 3.9
Identities = 9/17 (52%), Positives = 15/17 (88%)
Frame = +3
Query: 204 KLFVGGLSWETTDKELR 254
KLF+GG+SW+T ++ L+
Sbjct: 16 KLFIGGISWDTDEERLQ 32
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/60 (40%), Positives = 37/60 (61%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 436
+F +GE+ + V + TGR RGF F+ F P ID+V+ +H I+N+ VD K+A +R
Sbjct: 25 YFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVL-QDKHHIDNRDVDVKRAMSR 83
Score = 48.4 bits (110), Expect = 4e-06
Identities = 22/60 (36%), Positives = 36/60 (60%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPDGPG 690
G + + + D+T + +GF F++F+SE V+ +L + GK+V+VKRA PK PG
Sbjct: 134 GPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVKRALPKDANPG 193
Score = 46.8 bits (106), Expect = 1e-05
Identities = 20/57 (35%), Positives = 32/57 (56%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 427
+F YG + + D T R RGF F+ F + +S+D V+ H +N K+V+ K+A
Sbjct: 129 YFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVKRA 185
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD-GP 687
G +L+V + +K + +GF F+ F V++ +L+ K I ++VDVKRA + + P
Sbjct: 30 GEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQD-KHHIDNRDVDVKRAMSREEQSP 88
Query: 688 GG 693
G
Sbjct: 89 AG 90
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 195 DDRKLFVGGLSWETTDKELR 254
D KLF+GG+SW+T + LR
Sbjct: 4 DQGKLFIGGISWDTDENLLR 23
Score = 27.5 bits (58), Expect = 8.9
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +2
Query: 440 GKIFVGGLSSEISDDEIRNFFS 505
GK+F+GG+S + ++ +R +FS
Sbjct: 6 GKLFIGGISWDTDENLLREYFS 27
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 52.0 bits (119), Expect = 4e-07
Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 25/109 (22%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 436
+F YG++ + D TGR+RGF FIVF P ++V+ +H I+ + V+ KKA R
Sbjct: 25 YFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-MDKHIIDGRTVEAKKAVPR 83
Query: 437 -------------------HG------KIFVGGLSSEISDDEIRNFFSE 508
HG KIFVGGL S I+++E +N+F +
Sbjct: 84 DDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQ 132
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/59 (40%), Positives = 35/59 (59%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPDGP 687
GTI +V + +D + +GF FITF+S+ V+ +L + GK V+VKRA PK P
Sbjct: 134 GTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVPKEISP 192
Score = 49.2 bits (112), Expect = 3e-06
Identities = 22/57 (38%), Positives = 34/57 (59%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 427
+F +G I + V D NT R RGF FI F + +++D+V+ H +N K V+ K+A
Sbjct: 129 YFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRA 185
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 204 KLFVGGLSWETTDKELR 254
KLF+GG+SW+T ++ LR
Sbjct: 7 KLFIGGISWDTDEERLR 23
Score = 29.5 bits (63), Expect = 2.2
Identities = 9/22 (40%), Positives = 18/22 (81%)
Frame = +2
Query: 440 GKIFVGGLSSEISDDEIRNFFS 505
GK+F+GG+S + ++ +R++FS
Sbjct: 6 GKLFIGGISWDTDEERLRDYFS 27
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 52.0 bits (119), Expect = 4e-07
Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 25/109 (22%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 436
+F YG++ + D TGR+RGF FIVF P ++V+ +H I+ + V+ KKA R
Sbjct: 25 YFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-MDKHIIDGRTVEAKKAVPR 83
Query: 437 -------------------HG------KIFVGGLSSEISDDEIRNFFSE 508
HG KIFVGGL S I+++E +N+F +
Sbjct: 84 DDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQ 132
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/59 (40%), Positives = 35/59 (59%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPDGP 687
GTI +V + +D + +GF FITF+S+ V+ +L + GK V+VKRA PK P
Sbjct: 134 GTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVPKEISP 192
Score = 49.2 bits (112), Expect = 3e-06
Identities = 22/57 (38%), Positives = 34/57 (59%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 427
+F +G I + V D NT R RGF FI F + +++D+V+ H +N K V+ K+A
Sbjct: 129 YFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRA 185
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 204 KLFVGGLSWETTDKELR 254
KLF+GG+SW+T ++ LR
Sbjct: 7 KLFIGGISWDTDEERLR 23
Score = 29.5 bits (63), Expect = 2.2
Identities = 9/22 (40%), Positives = 18/22 (81%)
Frame = +2
Query: 440 GKIFVGGLSSEISDDEIRNFFS 505
GK+F+GG+S + ++ +R++FS
Sbjct: 6 GKLFIGGISWDTDEERLRDYFS 27
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 52.0 bits (119), Expect = 4e-07
Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 25/109 (22%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 436
+F YG++ + D TGR+RGF FIVF P ++V+ +H I+ + V+ KKA R
Sbjct: 25 YFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-MDKHIIDGRTVEAKKAVPR 83
Query: 437 -------------------HG------KIFVGGLSSEISDDEIRNFFSE 508
HG KIFVGGL S I+++E +N+F +
Sbjct: 84 DDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQ 132
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/59 (40%), Positives = 35/59 (59%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPDGP 687
GTI +V + +D + +GF FITF+S+ V+ +L + GK V+VKRA PK P
Sbjct: 134 GTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVPKEISP 192
Score = 49.2 bits (112), Expect = 3e-06
Identities = 22/57 (38%), Positives = 34/57 (59%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 427
+F +G I + V D NT R RGF FI F + +++D+V+ H +N K V+ K+A
Sbjct: 129 YFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRA 185
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 204 KLFVGGLSWETTDKELR 254
KLF+GG+SW+T ++ LR
Sbjct: 7 KLFIGGISWDTDEERLR 23
Score = 29.5 bits (63), Expect = 2.2
Identities = 9/22 (40%), Positives = 18/22 (81%)
Frame = +2
Query: 440 GKIFVGGLSSEISDDEIRNFFS 505
GK+F+GG+S + ++ +R++FS
Sbjct: 6 GKLFIGGISWDTDEERLRDYFS 27
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 50.8 bits (116), Expect = 8e-07
Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 21/105 (20%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 436
+F ++GE+ + D TGR+RGF F+VF P ++V+ +H I+ K V+ KKA R
Sbjct: 25 YFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL-KHIIDGKIVEAKKAVPR 83
Query: 437 HG---------------------KIFVGGLSSEISDDEIRNFFSE 508
KIFVGGL+S +++ E + +F++
Sbjct: 84 DDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQ 128
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/57 (38%), Positives = 32/57 (56%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 427
+F +G I + V D T R RGF FI + + E++DKV+ H +N K V+ K A
Sbjct: 125 YFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLA 181
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/55 (36%), Positives = 34/55 (61%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 675
G I +V + +D + +GF FI+++SE+ V+ +L+ + GK V+VK A PK
Sbjct: 130 GMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPK 184
Score = 35.5 bits (78), Expect = 0.034
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 681
G +LE + D+ + +GF F+ F V ++ K I GK V+ K+A P+ D
Sbjct: 30 GEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL-KHIIDGKIVEAKKAVPRDD 85
Score = 31.5 bits (68), Expect = 0.55
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +3
Query: 204 KLFVGGLSWETTDKELR 254
KLF+GG+SWET++ LR
Sbjct: 7 KLFIGGISWETSEDRLR 23
Score = 29.9 bits (64), Expect = 1.7
Identities = 10/20 (50%), Positives = 17/20 (85%)
Frame = +2
Query: 443 KIFVGGLSSEISDDEIRNFF 502
K+F+GG+S E S+D +R++F
Sbjct: 7 KLFIGGISWETSEDRLRDYF 26
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 180 APGRDDDRKLFVGGLSWETTDKELR 254
+PG + +K+FVGGL+ T+ E +
Sbjct: 99 SPGPSNSKKIFVGGLASSVTEAEFK 123
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 50.8 bits (116), Expect = 8e-07
Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 21/105 (20%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 436
+F ++GE+ + D TGR+RGF F+VF P ++V+ +H I+ K V+ KKA R
Sbjct: 25 YFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL-KHIIDGKIVEAKKAVPR 83
Query: 437 HG---------------------KIFVGGLSSEISDDEIRNFFSE 508
KIFVGGL+S +++ E + +F++
Sbjct: 84 DDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQ 128
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/57 (38%), Positives = 32/57 (56%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 427
+F +G I + V D T R RGF FI + + E++DKV+ H +N K V+ K A
Sbjct: 125 YFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLA 181
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/55 (36%), Positives = 34/55 (61%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 675
G I +V + +D + +GF FI+++SE+ V+ +L+ + GK V+VK A PK
Sbjct: 130 GMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPK 184
Score = 35.5 bits (78), Expect = 0.034
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 681
G +LE + D+ + +GF F+ F V ++ K I GK V+ K+A P+ D
Sbjct: 30 GEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL-KHIIDGKIVEAKKAVPRDD 85
Score = 31.5 bits (68), Expect = 0.55
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +3
Query: 204 KLFVGGLSWETTDKELR 254
KLF+GG+SWET++ LR
Sbjct: 7 KLFIGGISWETSEDRLR 23
Score = 29.9 bits (64), Expect = 1.7
Identities = 10/20 (50%), Positives = 17/20 (85%)
Frame = +2
Query: 443 KIFVGGLSSEISDDEIRNFF 502
K+F+GG+S E S+D +R++F
Sbjct: 7 KLFIGGISWETSEDRLRDYF 26
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 180 APGRDDDRKLFVGGLSWETTDKELR 254
+PG + +K+FVGGL+ T+ E +
Sbjct: 99 SPGPSNSKKIFVGGLASSVTEAEFK 123
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 50.4 bits (115), Expect = 1e-06
Identities = 24/60 (40%), Positives = 35/60 (58%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPDGPG 690
GT +V + +D + +GF FIT++SE+ V +L + GK V+VKRA PK PG
Sbjct: 132 GTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPKELSPG 191
Score = 48.4 bits (110), Expect = 4e-06
Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 23/107 (21%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA--- 427
+F ++GE+ + D TGR+RGF F+VF P ++ +++ +H I+ + V+ KKA
Sbjct: 25 YFSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVAEIVITEKHNIDGRLVEAKKAVPR 83
Query: 428 --------------------KARHGKIFVGGLSSEISDDEIRNFFSE 508
R KIFVGGL S +++ + + +F +
Sbjct: 84 DDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKTYFEQ 130
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/57 (31%), Positives = 34/57 (59%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 681
G ++E + D+T + +GF F+ F ++ V +++ T K I G+ V+ K+A P+ D
Sbjct: 30 GEVIEAVILKDRTTGRARGFGFVVF-ADPAVAEIVITEKHNIDGRLVEAKKAVPRDD 85
Score = 31.9 bits (69), Expect = 0.41
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = +3
Query: 189 RDDDRKLFVGGLSWETTDKELR 254
+ D+ KLF+GG+SW+T ++ L+
Sbjct: 2 QSDNGKLFIGGISWDTNEERLK 23
Score = 28.7 bits (61), Expect = 3.9
Identities = 8/23 (34%), Positives = 19/23 (82%)
Frame = +2
Query: 437 HGKIFVGGLSSEISDDEIRNFFS 505
+GK+F+GG+S + +++ ++ +FS
Sbjct: 5 NGKLFIGGISWDTNEERLKEYFS 27
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +3
Query: 132 NAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRIILE 266
N N S S PGR RK+FVGGL T+ + + E
Sbjct: 87 NMVNRSNSSSIQGSPGGPGRT--RKIFVGGLPSSVTESDFKTYFE 129
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 50.4 bits (115), Expect = 1e-06
Identities = 24/60 (40%), Positives = 35/60 (58%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPDGPG 690
GT +V + +D + +GF FIT++SE+ V +L + GK V+VKRA PK PG
Sbjct: 132 GTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPKELSPG 191
Score = 48.4 bits (110), Expect = 4e-06
Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 23/107 (21%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA--- 427
+F ++GE+ + D TGR+RGF F+VF P ++ +++ +H I+ + V+ KKA
Sbjct: 25 YFSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVAEIVITEKHNIDGRLVEAKKAVPR 83
Query: 428 --------------------KARHGKIFVGGLSSEISDDEIRNFFSE 508
R KIFVGGL S +++ + + +F +
Sbjct: 84 DDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKTYFEQ 130
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/57 (31%), Positives = 34/57 (59%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 681
G ++E + D+T + +GF F+ F ++ V +++ T K I G+ V+ K+A P+ D
Sbjct: 30 GEVIEAVILKDRTTGRARGFGFVVF-ADPAVAEIVITEKHNIDGRLVEAKKAVPRDD 85
Score = 31.9 bits (69), Expect = 0.41
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = +3
Query: 189 RDDDRKLFVGGLSWETTDKELR 254
+ D+ KLF+GG+SW+T ++ L+
Sbjct: 2 QSDNGKLFIGGISWDTNEERLK 23
Score = 28.7 bits (61), Expect = 3.9
Identities = 8/23 (34%), Positives = 19/23 (82%)
Frame = +2
Query: 437 HGKIFVGGLSSEISDDEIRNFFS 505
+GK+F+GG+S + +++ ++ +FS
Sbjct: 5 NGKLFIGGISWDTNEERLKEYFS 27
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +3
Query: 132 NAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRIILE 266
N N S S PGR RK+FVGGL T+ + + E
Sbjct: 87 NMVNRSNSSSIQGSPGGPGRT--RKIFVGGLPSSVTESDFKTYFE 129
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 47.6 bits (108), Expect = 8e-06
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Frame = +2
Query: 245 GAPYHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKK 424
G + +G++E V D +TGRSRGF ++ F + E + GEH + N+ ++ K
Sbjct: 18 GLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL-KGEHFLGNRILEVKV 76
Query: 425 AKARH---------GKIFVGGLSSEISDDEIRNFF 502
A + +IFV + S +S+ + R+ F
Sbjct: 77 ATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHF 111
Score = 46.4 bits (105), Expect = 2e-05
Identities = 25/57 (43%), Positives = 31/57 (54%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 681
G I ++ MP D Q +G FITF S V DL++ +GG V V RATPK D
Sbjct: 115 GEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLME-DTHDLGGTTVAVDRATPKED 170
Score = 37.1 bits (82), Expect = 0.011
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 376
HF YGEI + + D N+ + RG FI F + +S++ +M
Sbjct: 110 HFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLM 149
Score = 33.9 bits (74), Expect = 0.10
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 412
+FG +G I+ + DP RGF F+ F D+V A H I ++V
Sbjct: 259 YFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRV-ARRSHEICGQEV 309
Score = 33.9 bits (74), Expect = 0.10
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD-GP 687
G I + +P D ++ +GF F+TF +E V D + I G+EV + ATP + GP
Sbjct: 264 GHIQDAYIPKDPKRSGHRGFGFVTF-AENGVADRVARRSHEICGQEVAIDSATPLDEAGP 322
Score = 32.3 bits (70), Expect = 0.31
Identities = 15/47 (31%), Positives = 29/47 (61%)
Frame = +1
Query: 541 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPD 681
D++ + +GF ++TF S + + LK + +G + ++VK ATPK +
Sbjct: 37 DRSTGRSRGFGYVTFASAEDAKNALK-GEHFLGNRILEVKVATPKEE 82
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 40.7 bits (91), Expect = 9e-04
Identities = 19/55 (34%), Positives = 32/55 (58%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 675
G +V + D N+ +GF F+T++SE V ++++ + K V+VKRA PK
Sbjct: 144 GRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQSNFHELSDKRVEVKRAIPK 198
Score = 35.1 bits (77), Expect(2) = 2e-05
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 436
+F YG + V + TG+ RGF F+ F + K + H I K VD +KA +
Sbjct: 25 YFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKAL-RDTHFILGKPVDVRKAIRK 83
Query: 437 H 439
H
Sbjct: 84 H 84
Score = 30.7 bits (66), Expect(2) = 2e-05
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = +2
Query: 431 ARHGKIFVGGLSSEISDDEIRNFF 502
+R KIFVGGLSS +++E +++F
Sbjct: 117 SRTKKIFVGGLSSNTTEEEFKSYF 140
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESE-QVVNDLLKTPKRTIGGKEVDVKRATPK 675
G +LE + +K + +GF F+ F ++ VV L T I GK VDV++A K
Sbjct: 30 GAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRDT--HFILGKPVDVRKAIRK 83
Score = 28.3 bits (60), Expect = 5.1
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = +2
Query: 443 KIFVGGLSSEISDDEIRNFFS 505
K+FVGG++ E S++ ++ +FS
Sbjct: 7 KLFVGGIAKETSEEALKQYFS 27
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 201 RKLFVGGLSWETTDKELRIILE 266
+K+FVGGLS TT++E + E
Sbjct: 120 KKIFVGGLSSNTTEEEFKSYFE 141
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/57 (38%), Positives = 32/57 (56%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 427
+F +G I + V D T R RGF FI + + E++DKV+ H +N K V+ K A
Sbjct: 52 YFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLA 108
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/55 (36%), Positives = 34/55 (61%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 675
G I +V + +D + +GF FI+++SE+ V+ +L+ + GK V+VK A PK
Sbjct: 57 GMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPK 111
Score = 31.1 bits (67), Expect = 0.73
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +2
Query: 368 KVMAAGEHTINNKK---VDPKKAKARHGKIFVGGLSSEISDDEIRNFFSE 508
K + +H + NK + + KIFVGGL+S +++ E + +F++
Sbjct: 6 KAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQ 55
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 180 APGRDDDRKLFVGGLSWETTDKELR 254
+PG + +K+FVGGL+ T+ E +
Sbjct: 26 SPGPSNSKKIFVGGLASSVTEAEFK 50
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 44.8 bits (101), Expect = 6e-05
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 415
HF YGEI V D NTGRS+G+ F+ F+ PE+ + A I+ ++ +
Sbjct: 43 HFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGRRAN 95
Score = 31.5 bits (68), Expect = 0.55
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRAT---PKPD 681
G ILE + DK + KG+ F+TF + P I G+ + A+ P+P
Sbjct: 48 GEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGRRANCNLASLGRPRPP 107
Query: 682 GP 687
P
Sbjct: 108 LP 109
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +3
Query: 204 KLFVGGLSWETTDKELR 254
K+FVGGL+WET + LR
Sbjct: 25 KVFVGGLAWETQSETLR 41
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 44.4 bits (100), Expect = 7e-05
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 361
HF YG+I V TD NTGRS+G+ F+ F+ PE+
Sbjct: 43 HFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEA 77
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRAT 669
G ILE + DK + KG+ F+TF + P I G+ + A+
Sbjct: 48 GDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVDPTPIIDGRRANCNLAS 100
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +3
Query: 204 KLFVGGLSWETTDKELR 254
K+FVGGL+WET + LR
Sbjct: 25 KVFVGGLAWETQSETLR 41
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/62 (33%), Positives = 34/62 (54%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 439
F +YGEIE +V D +TGR +G+ F++FK + + + E + N+ V A +
Sbjct: 428 FESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKRPEKRMYNRIVVCNLASEKP 487
Query: 440 GK 445
GK
Sbjct: 488 GK 489
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/57 (38%), Positives = 31/57 (54%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 427
HF AYG++E + D TG+SRGFA V+K E +A I+ K ++ K A
Sbjct: 186 HFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLA 242
Score = 35.9 bits (79), Expect = 0.025
Identities = 22/81 (27%), Positives = 40/81 (49%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 439
F +YG++E V D TG+S+G+ F+ F +D + A + +KK+D + +
Sbjct: 95 FSSYGDLEEAIVILDKVTGKSKGYGFVTFM---HVDGALLALKEP--SKKIDGRVTVTQL 149
Query: 440 GKIFVGGLSSEISDDEIRNFF 502
G S+I+D +R +
Sbjct: 150 AASGNQGTGSQIADISMRKIY 170
Score = 31.5 bits (68), Expect = 0.55
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPDG 684
G + E + FDK + +GF +++ + L P + I GK ++ K A G
Sbjct: 191 GDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLAVDGKKG 248
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/60 (28%), Positives = 25/60 (41%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPDGPG 690
G + E + DK + KG+ F+TF LK P + I G+ + A G G
Sbjct: 99 GDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEPSKKIDGRVTVTQLAASGNQGTG 158
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/57 (38%), Positives = 31/57 (54%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 427
HF AYG++E + D TG+SRGFA V+K E +A I+ K ++ K A
Sbjct: 186 HFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLA 242
Score = 35.9 bits (79), Expect = 0.025
Identities = 22/81 (27%), Positives = 40/81 (49%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 439
F +YG++E V D TG+S+G+ F+ F +D + A + +KK+D + +
Sbjct: 95 FSSYGDLEEAIVILDKVTGKSKGYGFVTFM---HVDGALLALKEP--SKKIDGRVTVTQL 149
Query: 440 GKIFVGGLSSEISDDEIRNFF 502
G S+I+D +R +
Sbjct: 150 AASGNQGTGSQIADISMRKIY 170
Score = 31.5 bits (68), Expect = 0.55
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPDG 684
G + E + FDK + +GF +++ + L P + I GK ++ K A G
Sbjct: 191 GDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLAVDGKKG 248
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/60 (28%), Positives = 25/60 (41%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPDGPG 690
G + E + DK + KG+ F+TF LK P + I G+ + A G G
Sbjct: 99 GDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEPSKKIDGRVTVTQLAASGNQGTG 158
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 436
F YGE+ + D TGRSRGFAF+ F + E M ++ +++ A R
Sbjct: 54 FSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQLDGQDLHGRRIRVNYATER 112
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/61 (24%), Positives = 34/61 (55%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPDGPG 690
G +++ ++ D+ + +GF F+TF S + ++ ++ + + G+ + V AT + G G
Sbjct: 58 GEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQLDGQDLHGRRIRVNYATERGSGFG 117
Query: 691 G 693
G
Sbjct: 118 G 118
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/53 (32%), Positives = 31/53 (58%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 415
+F +GEI + TD NTG+S+G+ F+ F+ +S + +A I+ +K +
Sbjct: 36 YFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGRKAN 88
Score = 34.7 bits (76), Expect = 0.059
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRAT---PKPD 681
G ILE + DK + KG+ F+TF + P I G++ + A+ P+P
Sbjct: 41 GEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGRKANCNIASFGRPRPS 100
Query: 682 GPGG 693
P G
Sbjct: 101 PPRG 104
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 204 KLFVGGLSWETTDKELRIILE 266
K+FVGGL+WET E+R E
Sbjct: 18 KVFVGGLAWETPTDEMRRYFE 38
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 443 KIFVGGLSSEISDDEIRNFFSE 508
K+FVGGL+ E DE+R +F +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQ 39
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/53 (32%), Positives = 31/53 (58%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 415
+F +GEI + TD NTG+S+G+ F+ F+ +S + +A I+ +K +
Sbjct: 36 YFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGRKAN 88
Score = 34.7 bits (76), Expect = 0.059
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRAT---PKPD 681
G ILE + DK + KG+ F+TF + P I G++ + A+ P+P
Sbjct: 41 GEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGRKANCNIASFGRPRPS 100
Query: 682 GPGG 693
P G
Sbjct: 101 PPRG 104
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 204 KLFVGGLSWETTDKELRIILE 266
K+FVGGL+WET E+R E
Sbjct: 18 KVFVGGLAWETPTDEMRRYFE 38
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 443 KIFVGGLSSEISDDEIRNFFSE 508
K+FVGGL+ E DE+R +F +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQ 39
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 41.5 bits (93), Expect = 5e-04
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 12/95 (12%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM-AAGEHTINNKKV-------- 412
F A+G I S V DP+ G+S+G+ F+ + E+ + +N+K+V
Sbjct: 153 FSAFGPILSCKVAVDPS-GQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHK 211
Query: 413 ---DPKKAKARHGKIFVGGLSSEISDDEIRNFFSE 508
DP K + ++V LS +SD+E+ F E
Sbjct: 212 LQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGE 246
Score = 34.7 bits (76), Expect = 0.059
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 376
HF +G I S V DP+ G SRG F+ F PE + +
Sbjct: 346 HFAPFGTITSCKVMRDPS-GVSRGSGFVAFSTPEEATRAI 384
Score = 32.7 bits (71), Expect = 0.24
Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 8/90 (8%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM-AAGEHTINNKKV-------D 415
F G++ S+ V D T RS G+ ++ + P+ + + +N + + D
Sbjct: 65 FTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELNFMALNGRAIRVMYSVRD 124
Query: 416 PKKAKARHGKIFVGGLSSEISDDEIRNFFS 505
P K+ G IF+ L I + FS
Sbjct: 125 PSLRKSGVGNIFIKNLDKSIDHKALHETFS 154
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 41.1 bits (92), Expect = 7e-04
Identities = 21/57 (36%), Positives = 30/57 (52%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 427
+F +GEI V D T RS+GF F+ F+ ES + HTI+ + V+ K A
Sbjct: 28 YFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACENPNHTIDGRTVNCKLA 84
Score = 32.7 bits (71), Expect = 0.24
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRA 666
G I+ ++ D + KGF F+TF + + P TI G+ V+ K A
Sbjct: 33 GEIVYAKVVCDGATQRSKGFGFVTFREVESATRACENPNHTIDGRTVNCKLA 84
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI-NNKKVDPKKAKA 433
HF G++ +++ DP T SRGF FI K+ ++ + + +H++ + + +KA+
Sbjct: 94 HFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEKARR 153
Query: 434 RHGK 445
R G+
Sbjct: 154 RRGR 157
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 31.1 bits (67), Expect(2) = 0.001
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 269 YGEIESINVKTDPNTGRSRGFAFIVF 346
Y ++S V D NTGRS+G+ F+ F
Sbjct: 226 YPSVKSAKVVIDSNTGRSKGYGFVRF 251
Score = 28.3 bits (60), Expect(2) = 0.001
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +2
Query: 359 SIDKVMAAGEHTINNKKV--DPKKAKARHGKIFVGGLSSEISDDEIRNFFSE 508
S V+ AG H N ++ + IFVGG+ ++ D+++R FS+
Sbjct: 292 SSQAVILAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQ 343
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 361
+F +GEI V TD NTGRS+G+ F+ FK E+
Sbjct: 41 YFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEA 75
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 204 KLFVGGLSWETTDKELRIILE 266
K+FVGGL+WET +R E
Sbjct: 23 KIFVGGLAWETQRDTMRRYFE 43
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 412
F YGEI +V D +TGR++GF F++FK + + E + N+ V
Sbjct: 183 FEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNPEKRMYNRTV 233
Score = 33.1 bits (72), Expect = 0.18
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPDG 684
G I E + DK + KGF F+ F++ + LK P++ + + V A P G
Sbjct: 187 GEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNPEKRMYNRTVSCLPARPFNSG 244
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +3
Query: 177 EAPGRDDD-RKLFVGGLSWETTDKELRIILE 266
E+ RD R +FV GL W+TT + L+ E
Sbjct: 154 ESADRDSSQRNIFVRGLGWDTTHENLKAAFE 184
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNK 406
F YGEIE V D TG+++GF F++FK + + + + I N+
Sbjct: 124 FEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRILNR 172
Score = 35.1 bits (77), Expect = 0.045
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPDGPG 690
G I E + DK + KGF F+ F++ + + LK PK+ I + + A+ P G
Sbjct: 128 GEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRILNRTATCQLASMGPAASG 187
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +3
Query: 177 EAPGRD-DDRKLFVGGLSWETTDKELRIILE 266
EA RD RK+FV GL WETT + L + E
Sbjct: 95 EAADRDVTHRKIFVYGLPWETTRETLVGVFE 125
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNK 406
F YGEIE V D TG+++GF F++FK + + + + I N+
Sbjct: 124 FEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRILNR 172
Score = 35.1 bits (77), Expect = 0.045
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPDGPG 690
G I E + DK + KGF F+ F++ + + LK PK+ I + + A+ P G
Sbjct: 128 GEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRILNRTATCQLASMGPAASG 187
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +3
Query: 177 EAPGRD-DDRKLFVGGLSWETTDKELRIILE 266
EA RD RK+FV GL WETT + L + E
Sbjct: 95 EAADRDVTHRKIFVYGLPWETTRETLVGVFE 125
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVMAAGEHTINNKKVDPKKAKAR 436
F YG++ + D TGRSRGF F+ FK +++ D + ++ + + +A++R
Sbjct: 28 FAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSR 87
Score = 35.1 bits (77), Expect = 0.045
Identities = 15/62 (24%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDVKRATPKPDGP 687
G +++ ++ D+ + +GF F+TF+ E+ + D ++ + + G+ + V A + G
Sbjct: 32 GDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSRGSGG 91
Query: 688 GG 693
GG
Sbjct: 92 GG 93
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVMAAGEHTINNKKVDPKKAKAR 436
F YG++ + D TGRSRGF F+ FK +++ D + ++ + + +A++R
Sbjct: 28 FAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSR 87
Score = 35.1 bits (77), Expect = 0.045
Identities = 15/62 (24%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDVKRATPKPDGP 687
G +++ ++ D+ + +GF F+TF+ E+ + D ++ + + G+ + V A + G
Sbjct: 32 GDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSRGSGG 91
Query: 688 GG 693
GG
Sbjct: 92 GG 93
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 382
F YGE+ V D TGRSRGF F+ F + E+ + A
Sbjct: 60 FTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Score = 31.9 bits (69), Expect = 0.41
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT-PKRTIGGKEVDVKRATPKPDGP 687
G +++ + D+ + +GF F+TF S + + ++ R + G+ V V A + G
Sbjct: 64 GEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYANDRTSGG 123
Query: 688 G 690
G
Sbjct: 124 G 124
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 427
F +GEI +NV D T RS+G+ F+ FK ES + TI + + K A
Sbjct: 33 FKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKDPNPTIEGRITNCKLA 88
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 38.3 bits (85), Expect = 0.005
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 376
HF +G+I +++ D T RSRG A+I++ PE + M
Sbjct: 280 HFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAM 319
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA-GEHTINNKKVDPKKAKAR 436
F YG + V D +GRSRGF FI F +++D+ +AA ++ + + KA+
Sbjct: 27 FEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDKAQPH 86
Query: 437 HG 442
G
Sbjct: 87 QG 88
Score = 35.9 bits (79), Expect = 0.025
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDVKRATPKPDGP 687
G ++E ++ DK + +GF FITF+ ++ +++ + + G+ + V +A P G
Sbjct: 31 GHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDKAQPHQGGA 90
Query: 688 G 690
G
Sbjct: 91 G 91
Score = 30.7 bits (66), Expect = 0.96
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = +3
Query: 192 DDDRKLFVGGLSWETTDKELRIILE---HTVK*RVLM 293
D + + F+GGL+W T+D+ LR E H V+ +V++
Sbjct: 4 DPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVL 40
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT-PKRTIGGKEVDVKRATPKP 678
G ++E + +D+ + KGF F+T++S Q V + +K+ + G+++ V A +P
Sbjct: 228 GKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARP 284
Score = 34.7 bits (76), Expect(2) = 0.009
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 439
F + G +E + V D TGRSRGF F+ S+ +V AA + N ++D + +
Sbjct: 111 FESAGNVEMVEVIYDKITGRSRGFGFVTM---SSVSEVEAAAQQ-FNGYELDGRPLRVNA 166
Query: 440 G 442
G
Sbjct: 167 G 167
Score = 31.1 bits (67), Expect = 0.73
Identities = 13/60 (21%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT-INNKKVDPKKAKAR 436
F G++ V D ++GRS+GF F+ + + + + + + + ++ +++ +A+AR
Sbjct: 224 FSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEAR 283
Score = 21.8 bits (44), Expect(2) = 0.009
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +2
Query: 443 KIFVGGLSSEISDDEIRNFFSE 508
+++VG LS + D + + FSE
Sbjct: 205 RVYVGNLSWGVDDMALESLFSE 226
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/53 (30%), Positives = 30/53 (56%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 415
+F +GEI + TD TG+S+G+ F+ F+ +S + +A I+ +K +
Sbjct: 36 YFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADPNPVIDGRKAN 88
Score = 34.7 bits (76), Expect = 0.059
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRAT---PKPD 681
G ILE + DK + KG+ F+TF + P I G++ + A+ P+P
Sbjct: 41 GEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADPNPVIDGRKANCNIASFGRPRPS 100
Query: 682 GPGG 693
P G
Sbjct: 101 TPRG 104
Score = 31.5 bits (68), Expect = 0.55
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 437 HGKIFVGGLSSEISDDEIRNFFSE 508
H K+FVGGL+ E DE+R +F +
Sbjct: 16 HTKVFVGGLAWETPTDEMRRYFDQ 39
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +3
Query: 204 KLFVGGLSWETTDKELR 254
K+FVGGL+WET E+R
Sbjct: 18 KVFVGGLAWETPTDEMR 34
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 361
F YGEI +N+ D TG+S+GFAF+ ++ S
Sbjct: 56 FSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRS 89
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 37.5 bits (83), Expect = 0.008
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVF-------KAPESID-KVMAAGEHTINNKKVD 415
F YG++ + + D TG SRGFAF+ + KA E +D +V+ E T+ K
Sbjct: 36 FAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYG 95
Query: 416 PKKAKARHGKI 448
P K G++
Sbjct: 96 PNAEKISKGRV 106
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 37.5 bits (83), Expect = 0.008
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVF-------KAPESID-KVMAAGEHTINNKKVD 415
F YG++ + + D TG SRGFAF+ + KA E +D +V+ E T+ K
Sbjct: 36 FAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYG 95
Query: 416 PKKAKARHGKI 448
P K G++
Sbjct: 96 PNAEKISKGRV 106
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 37.5 bits (83), Expect = 0.008
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA--------GEHTINNKKVD 415
F + ++ +N+ D T SRG F++ + E DK++ A G +++ K
Sbjct: 38 FQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNACHNKKTLPGANSLLQVKYA 97
Query: 416 PKKAKARHGKIFVGGLSSEISDDEIRNFFSE 508
+ + K+FVG L +S+ E+++ FS+
Sbjct: 98 DGELERLEHKLFVGMLPKNVSEAEVQSLFSK 128
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 37.5 bits (83), Expect = 0.008
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA--------GEHTINNKKVD 415
F + ++ +N+ D T SRG F++ + E DK++ A G +++ K
Sbjct: 38 FQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNACHNKKTLPGANSLLQVKYA 97
Query: 416 PKKAKARHGKIFVGGLSSEISDDEIRNFFSE 508
+ + K+FVG L +S+ E+++ FS+
Sbjct: 98 DGELERLEHKLFVGMLPKNVSEAEVQSLFSK 128
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 37.5 bits (83), Expect = 0.008
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +2
Query: 236 HR*GAPYHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 415
H+ +F +G+I V TD ++GRS+G+ F+ F PE+ K I+ ++ +
Sbjct: 19 HKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVDPAPVIDGRRAN 78
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRA 666
G I+E + DK+ + KG+ F+TF + P I G+ + A
Sbjct: 31 GDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVDPAPVIDGRRANCNLA 82
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 204 KLFVGGLSWETTDKELRIILE 266
K+FVGGL+WET LR E
Sbjct: 8 KVFVGGLAWETHKVSLRNYFE 28
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 37.5 bits (83), Expect = 0.008
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +2
Query: 236 HR*GAPYHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 415
H+ +F +G+I V TD ++GRS+G+ F+ F PE+ K I+ ++ +
Sbjct: 19 HKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVDPAPVIDGRRAN 78
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRA 666
G I+E + DK+ + KG+ F+TF + P I G+ + A
Sbjct: 31 GDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVDPAPVIDGRRANCNLA 82
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 204 KLFVGGLSWETTDKELRIILE 266
K+FVGGL+WET LR E
Sbjct: 8 KVFVGGLAWETHKVSLRNYFE 28
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 37.1 bits (82), Expect = 0.011
Identities = 18/80 (22%), Positives = 35/80 (43%)
Frame = +2
Query: 272 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIF 451
GEI + + D ++G S+G+AF+ FK + K + K ++F
Sbjct: 140 GEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLSETKNRLF 199
Query: 452 VGGLSSEISDDEIRNFFSEL 511
+G + ++DE R ++
Sbjct: 200 IGNIPKNWTEDEFRKVIEDV 219
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/24 (50%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Frame = +2
Query: 278 IESINVKTDP-NTGRSRGFAFIVF 346
+E+I + DP NT R+RGFAF+++
Sbjct: 223 VENIELIKDPTNTTRNRGFAFVLY 246
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 36.7 bits (81), Expect = 0.015
Identities = 14/78 (17%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Frame = +2
Query: 263 GAYGEIESINVKTDPNTGRSRGFAFIVFKAPE-SIDKVMAAGEHTINNKKVDPKKAKARH 439
G+ GE+ + + + ++G +G+AF+ F++ + + + + K++ +A+H
Sbjct: 113 GSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTLNNTDFRGKRIKCSTTQAKH 172
Query: 440 GKIFVGGLSSEISDDEIR 493
++F+G + + +I+
Sbjct: 173 -RLFLGNVPRNWMESDIK 189
Score = 31.5 bits (68), Expect = 0.55
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 508 IGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRT-IGGKEV 651
IG + EV + +K KG+ F+TF S+ + + + T T GK +
Sbjct: 115 IGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTLNNTDFRGKRI 163
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 36.7 bits (81), Expect = 0.015
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 376
F ++GE+ V D TGRSRGF F+ F +S + +
Sbjct: 55 FTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Score = 31.1 bits (67), Expect = 0.73
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +3
Query: 117 NQLNGNAENGGGDSQDHNSAEAPG--RDDDRKLFVGGLSWETTDKELR 254
N+L+G G S + G R KLFVGGLSW T D L+
Sbjct: 5 NKLSGILRQGVSQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLK 52
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 36.7 bits (81), Expect = 0.015
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 376
F ++GE+ V D TGRSRGF F+ F +S + +
Sbjct: 55 FTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Score = 31.1 bits (67), Expect = 0.73
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +3
Query: 117 NQLNGNAENGGGDSQDHNSAEAPG--RDDDRKLFVGGLSWETTDKELR 254
N+L+G G S + G R KLFVGGLSW T D L+
Sbjct: 5 NKLSGILRQGVSQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLK 52
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 36.7 bits (81), Expect = 0.015
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFI 340
HF GE+ ++V TD TG SRGFA+I
Sbjct: 502 HFSKCGEVTRVHVPTDRETGASRGFAYI 529
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/54 (25%), Positives = 23/54 (42%)
Frame = +2
Query: 347 KAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSE 508
K ++ V A + K + + +F G LS +I+ +I NFF E
Sbjct: 353 KKDSDVEMVDAEQKSNAKQPKTPTNQTQGGSKTLFAGNLSYQIARSDIENFFKE 406
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 36.7 bits (81), Expect = 0.015
Identities = 22/55 (40%), Positives = 30/55 (54%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKK 424
FG YG I S V D + G+SR F F+ F+ PE + + A +N KK D K+
Sbjct: 245 FGQYGSISSAVVMRDGD-GKSRCFGFVNFENPEDAARAVEA----LNGKKFDDKE 294
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 36.3 bits (80), Expect = 0.019
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 269 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 379
Y + V TDP+TGRS+G+ F+ F ++ MA
Sbjct: 140 YSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMA 176
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 36.3 bits (80), Expect = 0.019
Identities = 16/69 (23%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +1
Query: 490 QKLLQ*IGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDVKRA 666
Q+ G +++ ++ D+ + +GF F+TF+ E+ + D ++ + + G+ + V A
Sbjct: 23 QRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEA 82
Query: 667 TPKPDGPGG 693
+ G GG
Sbjct: 83 QSRGSGGGG 91
Score = 35.1 bits (77), Expect = 0.045
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 415
F +G++ + D +GRSRGF F+ FK +K M +N K++D
Sbjct: 26 FSQFGDVIDSKIINDRESGRSRGFGFVTFKD----EKAMRDAIEEMNGKELD 73
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 36.3 bits (80), Expect = 0.019
Identities = 16/69 (23%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +1
Query: 490 QKLLQ*IGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDVKRA 666
Q+ G +++ ++ D+ + +GF F+TF+ E+ + D ++ + + G+ + V A
Sbjct: 23 QRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEA 82
Query: 667 TPKPDGPGG 693
+ G GG
Sbjct: 83 QSRGSGGGG 91
Score = 35.1 bits (77), Expect = 0.045
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 415
F +G++ + D +GRSRGF F+ FK +K M +N K++D
Sbjct: 26 FSQFGDVIDSKIINDRESGRSRGFGFVTFKD----EKAMRDAIEEMNGKELD 73
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 36.3 bits (80), Expect = 0.019
Identities = 16/69 (23%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +1
Query: 490 QKLLQ*IGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDVKRA 666
Q+ G +++ ++ D+ + +GF F+TF+ E+ + D ++ + + G+ + V A
Sbjct: 23 QRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEA 82
Query: 667 TPKPDGPGG 693
+ G GG
Sbjct: 83 QSRGSGGGG 91
Score = 35.1 bits (77), Expect = 0.045
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 415
F +G++ + D +GRSRGF F+ FK +K M +N K++D
Sbjct: 26 FSQFGDVIDSKIINDRESGRSRGFGFVTFKD----EKAMRDAIEEMNGKELD 73
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 36.3 bits (80), Expect = 0.019
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 376
F YG + S+ V D GRSRGF F+ F PE+ K M
Sbjct: 222 FSQYGTVSSVVVMRD-GMGRSRGFGFVNFCNPENAKKAM 259
Score = 32.3 bits (70), Expect = 0.31
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVF 346
FG YG+I S V N GRS+GF F+ F
Sbjct: 324 FGCYGQIVSAKVMCHEN-GRSKGFGFVCF 351
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 36.3 bits (80), Expect = 0.019
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 379
F ++G++ V TD ++GRS+GF F+ + E +K A
Sbjct: 54 FASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKA 93
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 36.3 bits (80), Expect = 0.019
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 415
HF +GEI V TD +GRS+G+ F+ F+ E+ I+ ++ +
Sbjct: 32 HFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRRAN 84
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/60 (25%), Positives = 25/60 (41%)
Frame = +1
Query: 490 QKLLQ*IGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRAT 669
+K + G ILE + DK + KG+ F+TF + I G+ + A+
Sbjct: 30 KKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRRANCNLAS 89
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 36.3 bits (80), Expect = 0.019
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 415
HF +GEI V TD +GRS+G+ F+ F+ E+ I+ ++ +
Sbjct: 32 HFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRRAN 84
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/60 (25%), Positives = 25/60 (41%)
Frame = +1
Query: 490 QKLLQ*IGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRAT 669
+K + G ILE + DK + KG+ F+TF + I G+ + A+
Sbjct: 30 KKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRRANCNLAS 89
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 36.3 bits (80), Expect = 0.019
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 415
HF +GEI V TD +GRS+G+ F+ F+ E+ I+ ++ +
Sbjct: 32 HFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRRAN 84
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/60 (25%), Positives = 25/60 (41%)
Frame = +1
Query: 490 QKLLQ*IGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRAT 669
+K + G ILE + DK + KG+ F+TF + I G+ + A+
Sbjct: 30 KKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRRANCNLAS 89
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 36.3 bits (80), Expect = 0.019
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 14/97 (14%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES----IDKV--MAAGE------HTINN 403
F ++G I S V D TGRS+G+ F+ F+ ES IDK+ M + H I
Sbjct: 156 FSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRR 214
Query: 404 KK--VDPKKAKARHGKIFVGGLSSEISDDEIRNFFSE 508
++ D R ++V L EI +DE+R F +
Sbjct: 215 QERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGK 251
Score = 31.9 bits (69), Expect = 0.41
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 358
F YG + S V +P G SRGF F+ + PE
Sbjct: 352 FSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPE 383
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 36.3 bits (80), Expect = 0.019
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +2
Query: 245 GAPYHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 379
G HF +G I S V D TGR+R FAF+ F + E D ++
Sbjct: 227 GLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALS 271
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT 394
F +G + S+ V +P TG SRG ++ + S +A+ + T
Sbjct: 128 FQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGT 172
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 35.9 bits (79), Expect = 0.025
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 427
F +GEIE + D TGR +GFA V+++ ES K + T + KA
Sbjct: 247 FSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPHKTFEGHVLHCHKA 302
Score = 35.5 bits (78), Expect = 0.034
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 19/101 (18%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV--------- 412
F YGEIE D +G+S+G+ FI+FK+ + + I +
Sbjct: 148 FKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQPQKKIGTRMTACQLASIGP 207
Query: 413 ---DPKKAKARH-------GKIFVGGLSSEISDDEIRNFFS 505
+P A A+H KI+V +S++I ++ FFS
Sbjct: 208 VQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFFS 248
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 35.9 bits (79), Expect = 0.025
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 14/92 (15%)
Frame = +2
Query: 275 EIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDP-----------K 421
EI S+ V + N G S G+ F+ F++ + DKV+ T P +
Sbjct: 128 EIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGE 187
Query: 422 KAKARHG---KIFVGGLSSEISDDEIRNFFSE 508
K +G IFVG LS ++SD+ + FSE
Sbjct: 188 KRLENNGPDLSIFVGDLSPDVSDNLLHETFSE 219
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 269 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 376
Y +++ V D NTGRS+G+ F+ F K M
Sbjct: 221 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 256
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 35.9 bits (79), Expect = 0.025
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 14/92 (15%)
Frame = +2
Query: 275 EIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDP-----------K 421
EI S+ V + N G S G+ F+ F++ + DKV+ T P +
Sbjct: 128 EIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGE 187
Query: 422 KAKARHG---KIFVGGLSSEISDDEIRNFFSE 508
K +G IFVG LS ++SD+ + FSE
Sbjct: 188 KRLENNGPDLSIFVGDLSPDVSDNLLHETFSE 219
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 269 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 376
Y +++ V D NTGRS+G+ F+ F K M
Sbjct: 221 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 256
Score = 29.1 bits (62), Expect = 2.9
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Frame = +2
Query: 254 YHFGAYG-EIESINVKTDPNTGRSRGFAFIVFKA-PESIDKVMAAGEHTINNKKVDPKKA 427
Y F +G E E T+ N + A + A P + G + N P+
Sbjct: 241 YGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPE-G 299
Query: 428 KARHGKIFVGGLSSEISDDEIRNFFSE 508
+ IFVGGL S ++D++++ F+E
Sbjct: 300 DIMNTTIFVGGLDSSVTDEDLKQPFNE 326
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 35.5 bits (78), Expect = 0.034
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKP 678
G I + + FDK + KG+ FI ++S + LK P++ IG + + A+ P
Sbjct: 164 GEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRMTACQLASKGP 219
Score = 35.5 bits (78), Expect = 0.034
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 427
F +GEIE + D TGR +GF V+K+ ES + + T + +KA
Sbjct: 265 FSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKA 320
Score = 32.7 bits (71), Expect = 0.24
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKA 352
F YGEIE D +G+S+G+ FI++K+
Sbjct: 160 FKQYGEIEDCKAVFDKISGKSKGYGFILYKS 190
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 35.5 bits (78), Expect = 0.034
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKP 678
G I + + FDK + KG+ FI ++S + LK P++ IG + + A+ P
Sbjct: 164 GEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRMTACQLASKGP 219
Score = 35.5 bits (78), Expect = 0.034
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 427
F +GEIE + D TGR +GF V+K+ ES + + T + +KA
Sbjct: 265 FSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKA 320
Score = 32.7 bits (71), Expect = 0.24
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKA 352
F YGEIE D +G+S+G+ FI++K+
Sbjct: 160 FKQYGEIEDCKAVFDKISGKSKGYGFILYKS 190
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 35.5 bits (78), Expect = 0.034
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKP 678
G I + + FDK + KG+ FI ++S + LK P++ IG + + A+ P
Sbjct: 164 GEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRMTACQLASKGP 219
Score = 35.5 bits (78), Expect = 0.034
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 427
F +GEIE + D TGR +GF V+K+ ES + + T + +KA
Sbjct: 265 FSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKA 320
Score = 32.7 bits (71), Expect = 0.24
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKA 352
F YGEIE D +G+S+G+ FI++K+
Sbjct: 160 FKQYGEIEDCKAVFDKISGKSKGYGFILYKS 190
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 35.5 bits (78), Expect = 0.034
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK-TPKRTIGGKEVDVKRATPKPDG 684
G I E ++ + + +GF FITF + +D +K R +G K + V +A PK G
Sbjct: 36 GKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPKVGG 94
Score = 34.7 bits (76), Expect = 0.059
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVMAAGEHTINNKKVDPKKAKAR 436
F YG+I + +TGR RGF FI F D + + NK + KA+ +
Sbjct: 32 FDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPK 91
Query: 437 HG 442
G
Sbjct: 92 VG 93
Score = 29.5 bits (63), Expect = 2.2
Identities = 9/18 (50%), Positives = 16/18 (88%)
Frame = +3
Query: 198 DRKLFVGGLSWETTDKEL 251
+ ++FVGGLSW+ T+++L
Sbjct: 11 ESRIFVGGLSWDVTERQL 28
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 35.5 bits (78), Expect = 0.034
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK-TPKRTIGGKEVDVKRATPKPDG 684
G I E ++ + + +GF FITF + +D +K R +G K + V +A PK G
Sbjct: 36 GKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPKVGG 94
Score = 34.7 bits (76), Expect = 0.059
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVMAAGEHTINNKKVDPKKAKAR 436
F YG+I + +TGR RGF FI F D + + NK + KA+ +
Sbjct: 32 FDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPK 91
Query: 437 HG 442
G
Sbjct: 92 VG 93
Score = 29.5 bits (63), Expect = 2.2
Identities = 9/18 (50%), Positives = 16/18 (88%)
Frame = +3
Query: 198 DRKLFVGGLSWETTDKEL 251
+ ++FVGGLSW+ T+++L
Sbjct: 11 ESRIFVGGLSWDVTERQL 28
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 35.5 bits (78), Expect = 0.034
Identities = 15/52 (28%), Positives = 29/52 (55%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 412
HF G++ +++ DP T SRGF FI K+ ++ + + +H++ +V
Sbjct: 64 HFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRV 115
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 35.1 bits (77), Expect = 0.045
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA------GEHTINNKKVDPK 421
F +G+I + + +TGRSRGF FI F ++D+ + G+ I+ + +PK
Sbjct: 27 FSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREMHGRDFGDRVISVNRAEPK 86
Score = 34.7 bits (76), Expect = 0.059
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDVKRATPK 675
G IL+ ++ ++ + +GF FITF + +++ ++ R G + + V RA PK
Sbjct: 31 GDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREMHGRDFGDRVISVNRAEPK 86
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = +2
Query: 431 ARHG-KIFVGGLSSEISDDEIRNFFS 505
A+ G +IFVGGLS E++D ++ FS
Sbjct: 3 AKEGSRIFVGGLSPEVTDRDLERAFS 28
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 35.1 bits (77), Expect = 0.045
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +2
Query: 254 YHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI---NNKKVDPKK 424
Y F + I+ + + D T SRGFAF+ F + E K + A T N K +
Sbjct: 476 YEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNRTALERNGKILRVAY 535
Query: 425 AKARHG 442
AK+ HG
Sbjct: 536 AKSVHG 541
Score = 31.5 bits (68), Expect = 0.55
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 269 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEH 391
+G + + V + N+G SRGFAFI F ++ +M EH
Sbjct: 321 WGPLHHVRVIREQNSGISRGFAFIDFPTVDAARTMMDRIEH 361
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 35.1 bits (77), Expect = 0.045
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID-KVMAAGEHTINNKKVDPKKA 427
F G++ S V P T +S GF F+ F + E ++ ++A + +K+ KA
Sbjct: 197 FSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 269 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 376
+G +E + V D +GRSR F F K+ E + V+
Sbjct: 99 HGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVV 134
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 35.1 bits (77), Expect = 0.045
Identities = 19/78 (24%), Positives = 36/78 (46%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 439
FG GE+ + + +P T +S+G AF+ F E + + + + N K A +
Sbjct: 234 FGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKELKSPMINGKKCGVTASQDN 293
Query: 440 GKIFVGGLSSEISDDEIR 493
+FVG + + + +R
Sbjct: 294 DTLFVGNICKIWTPEALR 311
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 35.1 bits (77), Expect = 0.045
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 364
F +GE+ + D TGRS+GF F+ FK +S+
Sbjct: 64 FNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSM 98
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPDGPG 690
G + + ++ D+ + KGF F+TF+ E D ++T + G+E+D + T + G G
Sbjct: 68 GEVFDSKIIIDRETGRSKGFRFVTFKDE----DSMRTAIDRMNGQELDGRNITAQARGSG 123
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 35.1 bits (77), Expect = 0.045
Identities = 13/30 (43%), Positives = 22/30 (73%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVF 346
HF + GEI++++V D +TG S+G A++ F
Sbjct: 424 HFSSCGEIKNVSVPIDRDTGNSKGIAYLEF 453
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 35.1 bits (77), Expect = 0.045
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 12/95 (12%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV-----DPKK 424
F + + +N+ + T RG F+ E DKV+ ++ +NKK P +
Sbjct: 32 FREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVI----NSFHNKKTLPGASSPLQ 87
Query: 425 AKARHG-------KIFVGGLSSEISDDEIRNFFSE 508
K G K+FVG L +S+ E+++ FSE
Sbjct: 88 VKYADGELERLEHKLFVGMLPKNVSETEVQSLFSE 122
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 34.7 bits (76), Expect = 0.059
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVF 346
F A+G +E + + DP TG+ +GF FI F
Sbjct: 285 FEAFGPVELVQLPLDPETGQCKGFGFIQF 313
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 34.7 bits (76), Expect = 0.059
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 379
FG + V + NTGRSRGF FI F++ E++ +A
Sbjct: 239 FGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALA 278
Score = 33.1 bits (72), Expect = 0.18
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLKTPKRTIGGKEVDV 657
GT+++V++ +DK ++ +GF F+T S E+ + IGG+ V V
Sbjct: 140 GTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKV 189
Score = 32.3 bits (70), Expect = 0.31
Identities = 20/79 (25%), Positives = 36/79 (45%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 439
FG G + + + D T RSRGF F+ + E + M N+ ++ + K
Sbjct: 136 FGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAM----QMFNSSQIGGRTVKVNF 191
Query: 440 GKIFVGGLSSEISDDEIRN 496
++ GG +E+ +IR+
Sbjct: 192 PEVPRGG-ENEVMRTKIRD 209
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 34.7 bits (76), Expect = 0.059
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 379
HF +GE+ + TDP TG+ G A+I F E+ + ++
Sbjct: 535 HFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENALS 575
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 34.7 bits (76), Expect = 0.059
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVF 346
F ++GE+ + + D +GRSRGF F+ F
Sbjct: 61 FSSFGEVAEVRIAYDKGSGRSRGFGFVDF 89
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 34.7 bits (76), Expect = 0.059
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 10/93 (10%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFK-------APESIDKVMAAGEHTINNK---K 409
F +G I S V T + G+SRG+ F+ F+ A ++++ + A + K K
Sbjct: 132 FKKFGNIVSCKVATLED-GKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKK 190
Query: 410 VDPKKAKARHGKIFVGGLSSEISDDEIRNFFSE 508
D K + ++ +++ L +++S+D +R F+E
Sbjct: 191 TDRVKPEEKYTNLYMKNLDADVSEDLLREKFAE 223
Score = 32.3 bits (70), Expect = 0.31
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP-ESIDKV 373
HF G I S + D G+S+GF F+ F P E+ID V
Sbjct: 323 HFSQCGTITSTKLMCDEK-GKSKGFGFVCFSTPEEAIDAV 361
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 34.3 bits (75), Expect = 0.078
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Frame = +2
Query: 260 FGAYGEIESI-NVKTDPNTGRSRGFAFIVFKAPESIDKVMAA--GEHTINNK 406
F A+G I S + DP+TG SRGF FI + + E+ D + + G++ N +
Sbjct: 132 FSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQ 183
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 34.3 bits (75), Expect = 0.078
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 415
FG++G+I V D +G SRGF F+ + + E + M A + NK++D
Sbjct: 56 FGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQA----MQNKELD 103
Score = 32.3 bits (70), Expect = 0.31
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT-PKRTIGGKEVDVKRATPKPDGP 687
G I++ + D+ +GF F+T++S +V N+ ++ + + G+ + V A G
Sbjct: 60 GKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAMQNKELDGRIIGVHPADSGGGGG 119
Query: 688 GG 693
GG
Sbjct: 120 GG 121
>At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 817
Score = 33.9 bits (74), Expect = 0.10
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 439
FG G ++SI + +TG+ RG A+ F E + +A KK+ ++ +
Sbjct: 671 FGDDGGVDSIRILHHKDTGKPRGLAYADFVDDEHLAAAIAKNRKMFFGKKISIARSNPKK 730
Query: 440 GK 445
GK
Sbjct: 731 GK 732
>At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 816
Score = 33.9 bits (74), Expect = 0.10
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 439
FG G ++SI + +TG+ RG A+ F E + +A KK+ ++ +
Sbjct: 671 FGDDGGVDSIRILHHKDTGKPRGLAYADFVDDEHLAAAIAKNRKMFFGKKISIARSNPKK 730
Query: 440 GK 445
GK
Sbjct: 731 GK 732
>At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing
protein low similarity to poly(A) binding protein II
from [Xenopus laevis] GI:11527140, [Mus musculus]
GI:2351846, [Bos taurus] GI:1051125; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) domain
Length = 537
Score = 33.9 bits (74), Expect = 0.10
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 272 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 379
G ++++ V TDP T +G AF+ F ES+ K +A
Sbjct: 469 GAVQNVIVVTDPVTRHPKGTAFVTFATKESVGKAVA 504
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 33.9 bits (74), Expect = 0.10
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 266 AYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 382
++G + N+ D TG S+G+AF V++ P D AA
Sbjct: 397 SFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAA 435
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 33.9 bits (74), Expect = 0.10
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 382
FG +GEI+++N+ D +G +G+A I ++ E ++A
Sbjct: 115 FGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISA 155
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 33.5 bits (73), Expect = 0.14
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 382
F +G++ V +D TGRSRGF F+ ++ +AA
Sbjct: 227 FSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
Score = 31.5 bits (68), Expect = 0.55
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +1
Query: 496 LLQ*IGTILEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLKTPKRTIGGKEVDVKRATP 672
L + GT+ E+ +++ +Q +GF F+T + E+ + K + G+ + V RA P
Sbjct: 132 LFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAP 191
Query: 673 KPDGP 687
+ P
Sbjct: 192 RGSRP 196
Score = 29.1 bits (62), Expect = 2.9
Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 14/97 (14%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVDPKKAKAR 436
F G +E V + +T +SRGF F+ E +K V +N +++ +A R
Sbjct: 133 FEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPR 192
Query: 437 HG-------------KIFVGGLSSEISDDEIRNFFSE 508
+I+VG L ++ + FSE
Sbjct: 193 GSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSE 229
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLKTPKRTIGGKEVDVKRATPKPDGP 687
G ++E ++ D+ ++ KGF F+TF S ++ L++ + + G+ + V A K
Sbjct: 58 GQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKAKQSLG 117
Query: 688 GG 693
GG
Sbjct: 118 GG 119
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVDPKKAKAR 436
F G++ + D + RS+GF F+ F + + K +M +N + + AKA+
Sbjct: 54 FSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKAK 113
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 33.5 bits (73), Expect = 0.14
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 379
F +G + S V DPN G S+G F+ F PE + M+
Sbjct: 152 FSPFGTVTSSKVMRDPN-GTSKGSGFVAFATPEEATEAMS 190
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 33.5 bits (73), Expect = 0.14
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVD 415
HF YG+I + +D T RS+G+ F+ FK ++ + IN ++ +
Sbjct: 36 HFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACEDSTPIINGRRAN 88
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRAT 669
G ILE + DK + KG+ F+TF+ + + I G+ + A+
Sbjct: 41 GDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACEDSTPIINGRRANCNLAS 93
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 33.5 bits (73), Expect = 0.14
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDVKRATPKP 678
G ++E + +D+ + KGF F+T S Q V + + + G+++ V A +P
Sbjct: 273 GKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARP 329
Score = 31.9 bits (69), Expect = 0.41
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 367
F + G +E + V D TGRSRGF F+ ++
Sbjct: 119 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVE 154
Score = 31.9 bits (69), Expect = 0.41
Identities = 14/60 (23%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVDPKKAKAR 436
F G++ V D ++GRS+GF F+ + + + K + + ++ +++ +A+AR
Sbjct: 269 FNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEAR 328
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 33.5 bits (73), Expect = 0.14
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDVKRATPKP 678
G ++E + +D+ + KGF F+T S Q V + + + G+++ V A +P
Sbjct: 281 GKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARP 337
Score = 31.9 bits (69), Expect = 0.41
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 367
F + G +E + V D TGRSRGF F+ ++
Sbjct: 119 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVE 154
Score = 31.9 bits (69), Expect = 0.41
Identities = 14/60 (23%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVDPKKAKAR 436
F G++ V D ++GRS+GF F+ + + + K + + ++ +++ +A+AR
Sbjct: 277 FNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEAR 336
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 361
FG YG+I S V D +G SR F F+ F +PE+
Sbjct: 245 FGKYGDISSAVVMKD-QSGNSRSFGFVNFVSPEA 277
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 358
F YG + S V + + G SRGF F+ + PE
Sbjct: 348 FSEYGNVTSCKVMMN-SQGLSRGFGFVAYSNPE 379
Score = 28.3 bits (60), Expect = 5.1
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT-INNKKV-------D 415
F + ++ V D T RS G+A++ F PE + M + + I ++ + D
Sbjct: 65 FNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAMESLNYAPIRDRPIRIMLSNRD 123
Query: 416 PKKAKARHGKIFVGGLSSEISDDEIRNFFS 505
P + G +F+ L + I + + FS
Sbjct: 124 PSTRLSGKGNVFIKNLDASIDNKALYETFS 153
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 33.1 bits (72), Expect = 0.18
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 382
F +G++ V D TGRSRGF F+ + +++ ++A
Sbjct: 264 FSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Score = 30.7 bits (66), Expect = 0.96
Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +1
Query: 496 LLQ*IGTILEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLKTPKRTIGGKEVDVKRATP 672
L + GT+ E+ +++ +Q +GF F+T S ++ + K + + G+ + V +A P
Sbjct: 169 LFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAP 228
Query: 673 KPDGP 687
+ P
Sbjct: 229 RGSRP 233
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/61 (21%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT-PKRTIGGKEVDVKRATPKPDGP 687
G ++E + +D+ + +GF F+T +N+ + + + G+ + V A +P
Sbjct: 268 GKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPRR 327
Query: 688 G 690
G
Sbjct: 328 G 328
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 33.1 bits (72), Expect = 0.18
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLKTPKRTIGGKEV 651
G +L+V++ DK + + KGF ++TF S E+ LL+ + + G+ V
Sbjct: 45 GQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLELNAQLVDGRVV 92
Score = 31.9 bits (69), Expect = 0.41
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 376
F YG++ ++V D R +GFA++ F + E +K +
Sbjct: 41 FSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKAL 79
>At1g72800.1 68414.m08416 nuM1-related contains similarity with nuM1
GI:1279563 from [Medicago sativa]
Length = 335
Score = 33.1 bits (72), Expect = 0.18
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI 397
+F ++GEI + V TG S G+A+I K E +K + G H +
Sbjct: 257 YFSSFGEITRVFVPPSHGTGGSLGYAYIDLK--EGAEKALELGRHDV 301
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 32.7 bits (71), Expect = 0.24
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG--------EHTINNKKVD 415
F +G ++ + V + TG+S+ F FI F+ PE + +AAG EH + ++
Sbjct: 80 FSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAE--IAAGAMNDYLLMEHMLKVHVIE 137
Query: 416 PKKAK 430
P+ K
Sbjct: 138 PENVK 142
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 32.7 bits (71), Expect = 0.24
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFK 349
F +G++ + D +GRSRGF F+ FK
Sbjct: 26 FSQFGDVIDSKIINDRESGRSRGFGFVTFK 55
Score = 30.7 bits (66), Expect = 0.96
Identities = 12/51 (23%), Positives = 28/51 (54%)
Frame = +1
Query: 490 QKLLQ*IGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGG 642
Q+ G +++ ++ D+ + +GF F+TF+ E+ + D ++ + GG
Sbjct: 23 QRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGSGGG 73
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 32.3 bits (70), Expect = 0.31
Identities = 23/102 (22%), Positives = 45/102 (44%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 439
F +G++ + V D +T +SRG AF+++ + E K + + I N + A +
Sbjct: 77 FSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSMDAKILNGRKLTVSIAADN 136
Query: 440 GKIFVGGLSSEISDDEIRNFFSELELS*KWRCPLTKQRTKER 565
G+ + + D+ R + E + CP + +ER
Sbjct: 137 GRA-SEFIKKRVYKDKSRCYECGDEGHLSYECPKNQLGPRER 177
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 31.9 bits (69), Expect = 0.41
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 382
F ++ + V T+ TGRSRG+ F+ F + +S + ++A
Sbjct: 51 FSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 31.9 bits (69), Expect = 0.41
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVF 346
F +G++ V D TGRSRGF F+ F
Sbjct: 55 FAHFGDVVDAKVIVDRETGRSRGFGFVNF 83
Score = 31.5 bits (68), Expect = 0.55
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +3
Query: 204 KLFVGGLSWETTDKELRIILEH 269
KLF+GGLSW T D LR H
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAH 57
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 31.9 bits (69), Expect = 0.41
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVF 346
F +G++ V D TGRSRGF F+ F
Sbjct: 55 FAHFGDVVDAKVIVDRETGRSRGFGFVNF 83
Score = 31.5 bits (68), Expect = 0.55
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +3
Query: 204 KLFVGGLSWETTDKELRIILEH 269
KLF+GGLSW T D LR H
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAH 57
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 31.9 bits (69), Expect = 0.41
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +3
Query: 153 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRIILE 266
DS+D + +E+P +KLF+ GLS+ T++K LR E
Sbjct: 267 DSRDQDDSESPPVKT-KKLFITGLSFYTSEKTLRAAFE 303
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 361
F +GE+ + + D + RS+G+AF+ + E+
Sbjct: 302 FEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEA 335
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 31.9 bits (69), Expect = 0.41
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFK 349
F A+ V D TGRSRGF F+ F+
Sbjct: 168 FSAFNSCSDARVMWDQKTGRSRGFGFVSFR 197
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 31.5 bits (68), Expect = 0.55
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVDPK 421
F YG + V D T RSRGF F+ + + + ++ + +N ++V K
Sbjct: 23 FSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGMDGKELNGRRVSVK 77
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 31.5 bits (68), Expect = 0.55
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 263 GAYGEIESINVKTDPNTGRSRGFAFIVF 346
G Y ++ V D NTGRS+G+ F+ F
Sbjct: 235 GRYPSVKGAKVVIDSNTGRSKGYGFVRF 262
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +2
Query: 380 AGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSE 508
AG H N D ++ + IFVGGL ++++++++ FS+
Sbjct: 310 AGGHGGNGSMSD---GESNNSTIFVGGLDADVTEEDLMQPFSD 349
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 31.1 bits (67), Expect = 0.73
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = +2
Query: 278 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAK 430
IE++ V DP+ +G A+++FK E+ + V+ G + +++ + K
Sbjct: 313 IEAVRVIRDPHLNIGKGIAYVLFKTREAANLVLKKGYLKLRERELRISRVK 363
>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 391
Score = 31.1 bits (67), Expect = 0.73
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +1
Query: 538 FDKTKNQRKGFC--FITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPDGPGG 693
F +T+ G C F+ FE V + +K +GG++V ++ P P G G
Sbjct: 289 FLRTRKDVMGVCYAFVEFEDMTSVENAIKASPIYLGGRQVYIEERRPNPAGVRG 342
>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 450
Score = 31.1 bits (67), Expect = 0.73
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +1
Query: 538 FDKTKNQRKGFC--FITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPDGPGG 693
F +T+ G C F+ FE V + +K +GG++V ++ P P G G
Sbjct: 348 FLRTRKDVMGVCYAFVEFEDMTSVENAIKASPIYLGGRQVYIEERRPNPAGVRG 401
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 31.1 bits (67), Expect = 0.73
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +2
Query: 446 IFVGGLSSEISDDEIRNFFSE 508
+FVGGL + ++DD ++N FS+
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQ 283
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 31.1 bits (67), Expect = 0.73
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +2
Query: 446 IFVGGLSSEISDDEIRNFFSE 508
+FVGGL + ++DD ++N FS+
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQ 283
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 30.7 bits (66), Expect = 0.96
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 358
F A+GEI + + D RS+G+AFI F + +
Sbjct: 60 FSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQD 92
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 30.7 bits (66), Expect = 0.96
Identities = 20/55 (36%), Positives = 27/55 (49%)
Frame = +1
Query: 490 QKLLQ*IGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVD 654
++L G I E + D + KGF FITF+SE LK ++ GK VD
Sbjct: 24 RQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALK----SLDGKIVD 74
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 376
F +G+I+ + D T R +GF FI F + + K +
Sbjct: 27 FSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 30.7 bits (66), Expect = 0.96
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFK 349
F Y V D TGRSRGF F+ F+
Sbjct: 159 FSVYPTCSDARVMWDQKTGRSRGFGFVSFR 188
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +2
Query: 446 IFVGGLSSEISDDEIRNFFSE 508
IFVGGL + ++DDE+++ F +
Sbjct: 262 IFVGGLDANVTDDELKSIFGQ 282
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 269 YGEIESINVKTDPNTGRSRGFAFIVF 346
YG ++ V D TGRS+G+ F+ F
Sbjct: 178 YGSVKGAKVVLDRTTGRSKGYGFVRF 203
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFK 349
F + V D TGRSRGF F+ F+
Sbjct: 164 FSVFSSCSDARVMWDQKTGRSRGFGFVSFR 193
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 376
F +G + + V D TG SRGF F+ F + E + +
Sbjct: 233 FHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAI 271
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 269 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 376
Y +++ V D NTGRS+G+ F+ F K M
Sbjct: 223 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 258
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +2
Query: 446 IFVGGLSSEISDDEIRNFFSE 508
IFVGGL S ++D++++ FSE
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSE 328
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 379
F +GE+ V TD +G S+GF F+ + E K +A
Sbjct: 76 FAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIA 115
>At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 399
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVDPKKAKA 433
+F +G ++ + + + R F F+ F PE++ ++A G H + + +V K K
Sbjct: 175 YFSTFGPVQDVRIPYQ----QKRMFGFVTFMYPETVKSILAKGNPHFVCHSRVLVKPYKE 230
Query: 434 RHGKI 448
+ GK+
Sbjct: 231 K-GKV 234
>At2g39260.1 68415.m04821 MIF4G domain-containing protein similar to
hUPF2 [Homo sapiens] GI:12232320; contains Pfam profile
PF02854: MIF4G domain
Length = 1186
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +3
Query: 126 NGNAENGG--GDSQDHNSAEAPGRDDDR 203
+GN E G GD D++ + PG DDD+
Sbjct: 962 DGNHERGSESGDGDDYDDGDGPGSDDDK 989
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFK-APESIDKVMAA 382
F +GE+ES+++ T R G AF+ FK A S+ + AA
Sbjct: 581 FTVFGEVESLSLVLHKVTKRPEGTAFVKFKTADASVAAISAA 622
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVDPKKAKAR 436
F G + + T+ + RGFAF+ F E +++ + T+ +++ K+A R
Sbjct: 40 FSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIELKNGSTVGGRRITVKQAAHR 99
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 370
HF G++ S + +P T SRGFAF+ + + ++
Sbjct: 91 HFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAER 128
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 370
HF G++ S + +P T SRGFAF+ + + ++
Sbjct: 90 HFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAER 127
>At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM), PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 540
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVDPKKAKA 433
+F +G ++ + + + R F F+ F PE++ ++A G H + + +V K K
Sbjct: 278 YFSTFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKSILAKGNPHFVCDSRVLVKPYKE 333
Query: 434 RHGKI 448
+ GK+
Sbjct: 334 K-GKV 337
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVF 346
F +YG I+ +++ TD T + +G+AFI +
Sbjct: 158 FESYGPIKRVHLVTDQLTNKPKGYAFIEY 186
>At3g18810.1 68416.m02389 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 700
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +3
Query: 84 NDNFAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDR 203
NDN + +N N N NGGG ++ S P R+ DR
Sbjct: 119 NDNNGNNNNGNNNDNNNQNNGGG--SNNRSPPPPSRNSDR 156
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 81 NNDNFAQDITTDNQLNGNAENGGGDSQDHNS 173
NN N D +N N N +N G+++D+N+
Sbjct: 76 NNGNNNNDNNNNNNGNNNNDNNNGNNKDNNN 106
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVM 376
F +G + + D +TG+SR F F+ F+ +S+ D +M
Sbjct: 27 FSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIM 66
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = +1
Query: 541 DKTKNQRKGFCFITFES-EQVVNDLLKTPKRTIGGKE--VDVKRAT 669
D T + KGF F FES E ++ + +RTI G+E V+V +AT
Sbjct: 237 DPTTKKPKGFGFYEFESAEGILRAIRLLTQRTIDGQELLVNVNQAT 282
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 376
F G++ V D +TGRSRG+ F+ + + ++ +
Sbjct: 197 FRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETAL 235
Score = 28.3 bits (60), Expect = 5.1
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 12/88 (13%)
Frame = +2
Query: 281 ESINVKTDPNTGRSRGFAFIVFKAPE-------SIDKVMAAGEHTINNKKVDPKKAK--- 430
E + V + +TG+SRGFAF+ E ++D G N PK K
Sbjct: 112 ELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKPNKEPL 171
Query: 431 --ARHGKIFVGGLSSEISDDEIRNFFSE 508
K+FVG LS ++ + + F E
Sbjct: 172 YPETEHKLFVGNLSWTVTSESLAGAFRE 199
>At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 552
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVDPKKAKA 433
+F +G ++ + + + R F F+ F PE++ V+A G H I + +V K K
Sbjct: 279 YFSLFGTVQDVRIPYQ----QKRMFGFVSFAHPETVKVVLARGNPHFICDSRVLVKPYKE 334
Query: 434 RHGKI 448
+ GK+
Sbjct: 335 K-GKV 338
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 376
F +G + +V D T SRGF F+ F + E + +
Sbjct: 194 FRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAI 232
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 541 DKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDVKRA 666
D+ + KGF FITFESE LK + + G+ + V+ A
Sbjct: 100 DQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLIFVETA 142
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 269 YGEIESINVKTDPNTGRSRGFAFIVFKAPES 361
Y ++ V D TGRS+G+ F+ F A ES
Sbjct: 197 YSSVKGAKVVNDRTTGRSKGYGFVRF-ADES 226
>At3g30820.1 68416.m03953 hypothetical protein
Length = 405
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +3
Query: 129 GNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRIILEH 269
G A+ G ++ EAP DD K + G +W+ D ++ + L+H
Sbjct: 2 GRAKAAAGTRARMSNTEAPTNDDPNKRPITG-TWDGMDTKMLVDLKH 47
>At2g47390.1 68415.m05915 expressed protein
Length = 961
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +3
Query: 126 NGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRIILE 266
+G AE+GGG S SA A +DD G + E+R I++
Sbjct: 78 SGGAEDGGGTSNGSLSASATATEDDELAI--GTGYRLPPPEIRDIVD 122
>At5g22830.1 68418.m02669 magnesium transporter CorA-like family
protein weak similarity to SP|Q01926 RNA splicing
protein MRS2, mitochondrial precursor {Saccharomyces
cerevisiae}; contains Pfam profile PF01544: CorA-like
Mg2+ transporter protein; supporting cDNA
gi|12007446|gb|AF322255.1|AF322255
Length = 459
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 78 ANNDNFAQDITTDNQ-LNGNAENGGGDSQDHNSAEAPGRDDDRKL 209
A + A+D D + LN + ++ G DS + GRDD +K+
Sbjct: 65 AKSPTTAEDFVGDYESLNVSDDDDGSDSNSSDGDNGGGRDDSKKI 109
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 266 AYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 382
++G ++ ++ D TG S+G+AF V++ D AA
Sbjct: 381 SFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 419
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 266 AYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 382
++G ++ ++ D TG S+G+AF V++ D AA
Sbjct: 381 SFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 419
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 266 AYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 382
++G ++ ++ D TG S+G+AF V++ D AA
Sbjct: 381 SFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 419
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +2
Query: 443 KIFVGGLSSEISDDEIRNFFSELELS*KWRCPL 541
K++VGG+ + ++DEIR++F + K C +
Sbjct: 162 KLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKM 194
Score = 27.9 bits (59), Expect = 6.8
Identities = 8/28 (28%), Positives = 19/28 (67%)
Frame = +3
Query: 192 DDDRKLFVGGLSWETTDKELRIILEHTV 275
D ++++G L+W+TT++++R + V
Sbjct: 259 DGYNRVYIGNLAWDTTERDIRKLFSDCV 286
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKA 433
FG +GE+ + + D RG ++ FKA +K + ++ ++D K KA
Sbjct: 118 FGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEK----AQLYMDGAQIDGKVVKA 171
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKA 433
FG +GE+ + + D RG ++ FKA +K + ++ ++D K KA
Sbjct: 118 FGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEK----AQLYMDGAQIDGKVVKA 171
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 27.9 bits (59), Expect = 6.8
Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 21/104 (20%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV-----DPKK 424
F + + +N+ + T RG F+ E DKV+ ++ +NKK P +
Sbjct: 32 FREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVI----NSFHNKKTLPGASSPLQ 87
Query: 425 AKARHG----------------KIFVGGLSSEISDDEIRNFFSE 508
K G K+FVG L +S+ E+++ FSE
Sbjct: 88 VKYADGELERLDVLDCSCNPEHKLFVGMLPKNVSETEVQSLFSE 131
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 367
F GEI+ I + D NT GF F++F + E +
Sbjct: 54 FSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTE 89
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 413 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSE 508
+P++ + GKIFVG L + I E FF +
Sbjct: 156 NPQQEFRQEGKIFVGNLPTWIKKPEFEEFFRQ 187
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 314 GRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 412
G SRGFAFI F++ +S + M + + +K+
Sbjct: 54 GESRGFAFIEFESADSAGRAMLHMDGRLIGQKI 86
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQ 597
G +LEV + DK Q++G CF+ + + +
Sbjct: 144 GNVLEVALIKDKRTGQQQGCCFVKYATSK 172
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 511 GTILEVEMPFDKTKNQRKGFCFITFESEQ 597
G +LEV + DK Q++G CF+ + + +
Sbjct: 144 GNVLEVALIKDKRTGQQQGCCFVKYATSK 172
>At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing
protein contains Pfam domain PF00076: RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 461
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 257 HFGAYGEIESINVKTDPNTGRSRGF 331
HF GEI + V +P+TG +GF
Sbjct: 367 HFSVCGEITRVFVPRNPSTGAIKGF 391
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 260 FGAYGEIESINVKTDPNTGRSRGFAFIVF 346
F +G + + + D +G+ RGFAF+ F
Sbjct: 67 FERFGPVRDVYIPRDYYSGQPRGFAFVEF 95
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 204 KLFVGGLSWETTDKELRIILE 266
K+FVG L+W TT +LR E
Sbjct: 13 KIFVGNLTWRTTADDLRRYFE 33
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 293 VKTDPNTGRSRGFAFIVFK 349
V D TGRSRGF F+ F+
Sbjct: 183 VMWDQKTGRSRGFGFVSFR 201
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,501,731
Number of Sequences: 28952
Number of extensions: 324191
Number of successful extensions: 1502
Number of sequences better than 10.0: 160
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1485
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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