Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060289.seq
         (691 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37260| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_9335| Best HMM Match : 7tm_1 (HMM E-Value=8.1e-05)                  29   3.6  
SB_39950| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_6589| Best HMM Match : zf-C2H2 (HMM E-Value=1.2e-36)                28   8.2  

>SB_37260| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 818

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +1

Query: 235 TETLRSPNTVRHMRNSCDGMFVRL 306
           T+T+ + N  RH++ +CD +FVRL
Sbjct: 535 TDTIETCNLHRHLKKTCDRLFVRL 558


>SB_9335| Best HMM Match : 7tm_1 (HMM E-Value=8.1e-05)
          Length = 226

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
 Frame = +3

Query: 285 RRHVRSVSSFLISE*NNQTDECTCSFSRLRHSVRSVRDFE---ILFVKTNYNISYGVFI* 455
           RRHVRSV++ LI+      D  TC    +  ++  V DFE   +LF   +  ++    + 
Sbjct: 47  RRHVRSVANMLITN-LATVDLATCCLG-IPVTITRVIDFENNQVLFCLAHEGLTSA--LR 102

Query: 456 TLYVLT*TVYAKSRWTDLXNYPFPXKLNF 542
              ++T  +    R+  + N PF  KLNF
Sbjct: 103 NASIVTLLLICFDRYESIRN-PFRRKLNF 130


>SB_39950| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1249

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/47 (27%), Positives = 28/47 (59%)
 Frame = +1

Query: 1   RHERTCVMRSEVSIHLSYISCPVRSLTYIH*GEEETFVIGRINFLVL 141
           R +R+ +MRSE  +    ++ P+RS  +++  +   FV  R++ ++L
Sbjct: 234 RWQRSRLMRSETGLSTEPVTHPLRSPFFLNDRDLLVFVTRRVHIMIL 280


>SB_6589| Best HMM Match : zf-C2H2 (HMM E-Value=1.2e-36)
          Length = 651

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = -3

Query: 185 ATRKTNEHMKNFKISRTKKFMRPITKVSSSPQCIYVKLLTGQDIYERWIDTSD 27
           AT K+N+ ++  +   T +    + + +  PQC     + G+D+  +  DT D
Sbjct: 442 ATSKSNQGVRKAEEKGTHQIDVQVMESTDIPQCHATNAIAGEDVKAKKEDTED 494


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,733,323
Number of Sequences: 59808
Number of extensions: 293217
Number of successful extensions: 470
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)