Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060288.seq
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.10c |tif512||translation initiation factor|Schizosacchar...   111   7e-26
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos...   111   7e-26
SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc...    31   0.16 
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   3.4  
SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    27   3.4  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    26   4.4  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   5.9  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    25   7.8  

>SPBC336.10c |tif512||translation initiation
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score =  111 bits (268), Expect = 7e-26
 Identities = 49/66 (74%), Positives = 57/66 (86%)
 Frame = +3

Query: 57  MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHL 236
           M + E   FE G++GAS TFPMQCSALRKNG V++KGRPCKIV+MSTSKTGKHGHAKVH+
Sbjct: 1   MAEEEHVDFEGGEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHI 60

Query: 237 VGIDIF 254
           V +DIF
Sbjct: 61  VALDIF 66



 Score =  105 bits (253), Expect = 5e-24
 Identities = 44/87 (50%), Positives = 67/87 (77%)
 Frame = +2

Query: 254 HGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQL 433
           +G+KYED+ PSTHNMDVP VKR++YQL +I DDGYL LM  +G  ++D+++P+G+LG ++
Sbjct: 67  NGRKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEGELGNEI 125

Query: 434 RTDFDSGKELLCTVLKSCGEECVIASK 514
              F+ GK+L+ TV+ + GEE  +A +
Sbjct: 126 EEGFEEGKDLIITVVSAMGEEIALACR 152


>SPAC26H5.10c |tif51||translation initiation factor
           eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score =  111 bits (268), Expect = 7e-26
 Identities = 49/66 (74%), Positives = 57/66 (86%)
 Frame = +3

Query: 57  MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHL 236
           M + E   FE G++GAS TFPMQCSALRKNG V++KGRPCKIV+MSTSKTGKHGHAKVH+
Sbjct: 1   MAEEEHVDFEGGEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHI 60

Query: 237 VGIDIF 254
           V +DIF
Sbjct: 61  VALDIF 66



 Score =  106 bits (254), Expect = 3e-24
 Identities = 44/87 (50%), Positives = 67/87 (77%)
 Frame = +2

Query: 254 HGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQL 433
           +G+KYED+ PSTHNMDVP VKR++YQL +I DDGYL LM  +G  ++D+++P+G+LG ++
Sbjct: 67  NGRKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEGELGNEI 125

Query: 434 RTDFDSGKELLCTVLKSCGEECVIASK 514
              FD G++L+ TV+ + GEE  +A +
Sbjct: 126 EEGFDEGRDLIITVVSAMGEETALACR 152


>SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 349

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 21/74 (28%), Positives = 37/74 (50%)
 Frame = +2

Query: 335 TDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEECVIASK 514
           +DIS + YL L  D+  L+   + P+ ++    ++DFD    +LCT  K+     V+ S 
Sbjct: 18  SDISSE-YLLLELDDDLLKTLEENPEEEI--VFKSDFDKKASVLCTSDKTYAVRQVVQSN 74

Query: 515 XTQALDKIKPTSGI 556
                D++ PT  +
Sbjct: 75  SYLLFDELSPTDWV 88


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 293  NMDVPHVKREDYQLTDISDDGYL 361
            NM +P+++ E  Q+ D + D YL
Sbjct: 968  NMSIPYIRGEYVQMIDANQDNYL 990


>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 204

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 149 FRYAEGSSMQDC*NVHIQNRKARPR*SSLGWD 244
           + + E   +Q C N+  +N +A  R SS GWD
Sbjct: 41  YHHLEKGLLQQCFNLVKKNMEALYRQSSFGWD 72


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -2

Query: 392  HAGHRCQPSGSGSHHPRYQSVGSLRASRGVRP 297
            H G    P+      PR  + GS  A+RG RP
Sbjct: 957  HVGTGLPPTSKSKPFPRLATGGSTAAARGPRP 988


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -1

Query: 504  MTHSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSS 391
            +  S+P   STV N+S P++ S  +   +P + S +L SS
Sbjct: 1254 LNSSTPITSSTVVNSSTPITSSTALNTSIPITSSSVLNSS 1293



 Score = 25.4 bits (53), Expect = 7.8
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -1

Query: 504  MTHSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSSRRSPLSAI 367
            +  S+P   STV N+S P++ S  +    P + S +L SS     S+I
Sbjct: 3138 LNSSTPITSSTVVNSSTPITSSTTLNTSTPITSSSVLNSSTAITSSSI 3185


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +2

Query: 311 VKREDYQLTDISDDGYL 361
           +KREDY+LT  ++ GYL
Sbjct: 91  IKREDYELTLCANCGYL 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,661,197
Number of Sequences: 5004
Number of extensions: 55270
Number of successful extensions: 202
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)