Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060288.seq
(687 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ855483-1|ABH88170.1| 117|Apis mellifera chemosensory protein ... 25 0.68
AJ973398-1|CAJ01445.1| 117|Apis mellifera hypothetical protein ... 25 0.68
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 23 2.7
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 23 2.7
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 22 4.8
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.3
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.3
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.3
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.3
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.3
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.3
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 6.3
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 6.3
DQ863218-1|ABI94394.1| 399|Apis mellifera tyramine receptor pro... 21 8.3
DQ863217-1|ABI94393.1| 399|Apis mellifera tyramine receptor pro... 21 8.3
AJ245824-1|CAB76374.1| 399|Apis mellifera G-protein coupled rec... 21 8.3
>DQ855483-1|ABH88170.1| 117|Apis mellifera chemosensory protein 2
protein.
Length = 117
Score = 25.0 bits (52), Expect = 0.68
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 145 FLRRAEHCMGKVAEAPESPVSKCVSSMSPIVV 50
+LRR C + EAP PV + + S++P+V+
Sbjct: 47 YLRRQLKCA--LGEAPCDPVGRRLKSLAPLVL 76
>AJ973398-1|CAJ01445.1| 117|Apis mellifera hypothetical protein
protein.
Length = 117
Score = 25.0 bits (52), Expect = 0.68
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 145 FLRRAEHCMGKVAEAPESPVSKCVSSMSPIVV 50
+LRR C + EAP PV + + S++P+V+
Sbjct: 47 YLRRQLKCA--LGEAPCDPVGRRLKSLAPLVL 76
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 23.0 bits (47), Expect = 2.7
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +1
Query: 64 TSKTHTSRPETPGPQ 108
T H PETPGPQ
Sbjct: 462 TPHHHPHPPETPGPQ 476
>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
protein.
Length = 1770
Score = 23.0 bits (47), Expect = 2.7
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = -1
Query: 579 KSFCXPLKMPEVG---FILSRACVXFEAMTHSSPQDFSTVHNN 460
+SF L+ P+V F+ + A + F M H++ + ++HNN
Sbjct: 547 RSFFELLQNPKVSNEQFLNTAATLSFCEMIHNAQVNKRSIHNN 589
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 22.2 bits (45), Expect = 4.8
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -3
Query: 211 FPVLDVDISTILHGR 167
FPVL V I+ +LHG+
Sbjct: 8 FPVLFVIINVLLHGQ 22
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.3
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -1
Query: 462 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 364
N L + +R N PSG +RS+ +P+S R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.3
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -1
Query: 462 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 364
N L + +R N PSG +RS+ +P+S R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.3
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -1
Query: 462 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 364
N L + +R N PSG +RS+ +P+S R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.3
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -1
Query: 462 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 364
N L + +R N PSG +RS+ +P+S R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.3
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -1
Query: 462 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 364
N L + +R N PSG +RS+ +P+S R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.3
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -1
Query: 462 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 364
N L + +R N PSG +RS+ +P+S R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 6.3
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -1
Query: 462 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 364
N L + +R N PSG +RS+ +P+S R
Sbjct: 412 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 446
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 6.3
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -1
Query: 462 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 364
N L + +R N PSG +RS+ +P+S R
Sbjct: 412 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 446
>DQ863218-1|ABI94394.1| 399|Apis mellifera tyramine receptor
protein.
Length = 399
Score = 21.4 bits (43), Expect = 8.3
Identities = 8/22 (36%), Positives = 10/22 (45%)
Frame = +1
Query: 190 CPHPKPESTATLKFTWLGLISS 255
CP P TWLG ++S
Sbjct: 353 CPDCCPSDRMVYFITWLGYVNS 374
>DQ863217-1|ABI94393.1| 399|Apis mellifera tyramine receptor
protein.
Length = 399
Score = 21.4 bits (43), Expect = 8.3
Identities = 8/22 (36%), Positives = 10/22 (45%)
Frame = +1
Query: 190 CPHPKPESTATLKFTWLGLISS 255
CP P TWLG ++S
Sbjct: 353 CPDCCPSDRMVYFITWLGYVNS 374
>AJ245824-1|CAB76374.1| 399|Apis mellifera G-protein coupled
receptor protein.
Length = 399
Score = 21.4 bits (43), Expect = 8.3
Identities = 8/22 (36%), Positives = 10/22 (45%)
Frame = +1
Query: 190 CPHPKPESTATLKFTWLGLISS 255
CP P TWLG ++S
Sbjct: 353 CPDCCPSDRMVYFITWLGYVNS 374
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,927
Number of Sequences: 438
Number of extensions: 4398
Number of successful extensions: 19
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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