Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060286.seq
         (677 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...   114   7e-28
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    95   6e-22
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    95   6e-22
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    88   5e-20
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    67   1e-13
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    23   1.7  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    23   1.7  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    22   4.0  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    22   4.0  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    22   5.3  
AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esteras...    22   5.3  
AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esteras...    22   5.3  
DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase rever...    21   7.0  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   7.0  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   7.0  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score =  114 bits (274), Expect = 7e-28
 Identities = 49/90 (54%), Positives = 64/90 (71%), Gaps = 1/90 (1%)
 Frame = +1

Query: 232 LCHLRG-QGTGKHYGASSCDGCKGFFRRSVRKNHLYTCRFSRNCVVDKDKRNQCRYCRLR 408
           LC + G + +GKHYG  SC+GCKGFF+R+VRK+  Y CR  +NC++DK +RN+C+YCR +
Sbjct: 85  LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREEKNCIIDKRQRNRCQYCRYQ 144

Query: 409 KCFKAGMKKEAVQNERDRINCRRPSYEEPT 498
           KC   GMK+EAVQ ER R   R  S  E T
Sbjct: 145 KCLNMGMKREAVQEERQRTKDRDTSEVEST 174



 Score = 29.9 bits (64), Expect = 0.020
 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
 Frame = +3

Query: 459 QDQLQATVLRRTDAGQRLSVVSLLNAELLSRKVID--ETVNVSD---AEINNRKLAKIND 623
           Q++ Q T  R T     +   S L A++   ++I+  + V  +D   A + N     +N+
Sbjct: 157 QEERQRTKDRDTS---EVESTSNLQADMPLERIIEAEKRVECNDPLVALVVNENNTTVNN 213

Query: 624 VCDSIKQQLLILVEWAK 674
           +C +  +QL  LV+WAK
Sbjct: 214 ICQATHKQLFQLVQWAK 230


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 94.7 bits (225), Expect = 6e-22
 Identities = 40/77 (51%), Positives = 53/77 (68%), Gaps = 3/77 (3%)
 Frame = +1

Query: 235 CHLRGQ-GTGKHYGASSCDGCKGFFRRSVRKNHLYTCRFSR--NCVVDKDKRNQCRYCRL 405
           C + G   +GKHY   +CDGC GFF+RS+R+N  Y C+     +C++DK  RNQCR CRL
Sbjct: 38  CKVCGDFSSGKHYNIFACDGCAGFFKRSIRRNRQYVCKAKDEGSCIIDKTHRNQCRACRL 97

Query: 406 RKCFKAGMKKEAVQNER 456
           +KC   GM K+AVQ+ER
Sbjct: 98  KKCQNVGMNKDAVQHER 114


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 94.7 bits (225), Expect = 6e-22
 Identities = 40/77 (51%), Positives = 53/77 (68%), Gaps = 3/77 (3%)
 Frame = +1

Query: 235 CHLRGQ-GTGKHYGASSCDGCKGFFRRSVRKNHLYTCRFSR--NCVVDKDKRNQCRYCRL 405
           C + G   +GKHY   +CDGC GFF+RS+R+N  Y C+     +C++DK  RNQCR CRL
Sbjct: 38  CKVCGDFSSGKHYNIFACDGCAGFFKRSIRRNRQYVCKAKDEGSCIIDKTHRNQCRACRL 97

Query: 406 RKCFKAGMKKEAVQNER 456
           +KC   GM K+AVQ+ER
Sbjct: 98  KKCQNVGMNKDAVQHER 114


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 88.2 bits (209), Expect = 5e-20
 Identities = 36/75 (48%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
 Frame = +1

Query: 232 LCHLRG-QGTGKHYGASSCDGCKGFFRRSVRKNHLYTCRFSRNCVVDKDKRNQCRYCRLR 408
           LC + G + +G HY A +C+GCKGFFRRS+ KN +Y C++  NC +D   R +C+ CRL+
Sbjct: 187 LCLVCGDRASGYHYNALTCEGCKGFFRRSITKNAVYQCKYGNNCEIDMYMRRKCQECRLK 246

Query: 409 KCFKAGMKKEAVQNE 453
           KC   GM+ E V  E
Sbjct: 247 KCLSVGMRPECVVPE 261


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 66.9 bits (156), Expect = 1e-13
 Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
 Frame = +1

Query: 232 LCHLRGQ-GTGKHYGASSCDGCKGFFRRSVRK-NHLYTCRFSRNCVVDKDKRNQCRYCRL 405
           LC + G+   G H+GA +C+GCK FF R+    + +  C+ +  CV++K  R  C+ CRL
Sbjct: 4   LCKVCGEPAAGFHFGAFTCEGCKSFFGRTYNNISSISECKNNGECVINKKNRTACKACRL 63

Query: 406 RKCFKAGMKK 435
           RKC   GM K
Sbjct: 64  RKCLLVGMSK 73


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 585 AEINNRKLAKINDVCDSIKQQLLILVEWA 671
           + + N+KL  +N   D IKQ +  L  W+
Sbjct: 284 SRVANQKLRDLNREVDQIKQDVEDLKRWS 312


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +3

Query: 366 RQRQKEPMQIL*IKEVLQSRHEKRSCSKRKGQ 461
           RQR+ +P++I  +K       + R C+   G+
Sbjct: 22  RQRRSQPLKISCLKTTPPPEEDNRGCAASVGE 53


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -1

Query: 170 YHYCNNVAQATNIVARGLSIPVIRRLRL 87
           YH CN V  AT      L + + RR  +
Sbjct: 158 YHICNTVISATVCFMMLLMLEIWRRFTI 185


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -1

Query: 170 YHYCNNVAQATNIVARGLSIPVIRRLRL 87
           YH CN V  AT      L + + RR  +
Sbjct: 154 YHICNTVISATVCFMMLLMLEIWRRFTI 181


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 369 VDYTVPAETACIQMVLPHAPSEESFASVTGRGTVVLARP 253
           VD +V A   C Q  +PH   ++ +  V G+ T    RP
Sbjct: 469 VDGSV-APKECKQDFMPHELCDKYYRCVHGKPTEFACRP 506


>AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 234 VPSAGTGDGQALRCLVL*RMQRILQTEREEEPFVYMPFQQ 353
           +   GT DG  ++CL     ++I  T    + + Y+PF Q
Sbjct: 245 IVGCGT-DGTMIKCLKSRPARQIALTVPRYQAWWYLPFAQ 283


>AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 234 VPSAGTGDGQALRCLVL*RMQRILQTEREEEPFVYMPFQQ 353
           +   GT DG  ++CL     ++I  T    + + Y+PF Q
Sbjct: 245 IVGCGT-DGTMIKCLKSRPARQIALTVPRYQAWWYLPFAQ 283


>DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 73

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 357 LCSRQRQKEPMQIL 398
           LC + + K+P+QIL
Sbjct: 36  LCKKHKTKKPVQIL 49


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 357 LCSRQRQKEPMQIL 398
           LC + + K+P+QIL
Sbjct: 36  LCKKHKTKKPVQIL 49


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 283 CDGCKGFFRR 312
           CD C+G FRR
Sbjct: 249 CDKCRGRFRR 258


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,863
Number of Sequences: 336
Number of extensions: 3372
Number of successful extensions: 22
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)