Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060286.seq
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    29   0.62 
SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|c...    25   7.6  
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy...    25   7.6  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    25   7.6  

>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 29.1 bits (62), Expect = 0.62
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -2

Query: 676 YLAHSTNMSSCCFIESHTSLIFASFLLFISASLTFTVSSM 557
           Y  +STNM    F E+   LI   F LF+      T+ S+
Sbjct: 268 YTRYSTNMRDRLFTEAKIPLIICFFALFVVRFFAITIQSI 307


>SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
 Frame = -1

Query: 239 WHNAGIWSW-----NWLRLPRYCSSPAAYHYCN 156
           W++ G+W++     +    P YCS+P+  +Y N
Sbjct: 110 WYSIGLWNYCQGNSSDYTNPTYCSTPSPSYYFN 142


>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
 Frame = -1

Query: 170 YHYCN---NVAQATNIVARGLSIPVI 102
           + +CN    +   TN+ ARGL IP +
Sbjct: 380 FEFCNAEKGILLCTNVAARGLDIPAV 405


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 20/82 (24%), Positives = 38/82 (46%)
 Frame = +3

Query: 294 QRILQTEREEEPFVYMPFQQELCSRQRQKEPMQIL*IKEVLQSRHEKRSCSKRKGQDQLQ 473
           +RI Q E E         Q+E   + R++E +    +KE+ +   E+    +++ + + +
Sbjct: 88  ERIRQKEAERLKREKERQQREQEKKLREQEKIAAKKMKELEKLEKERIRLQEQQRRKEER 147

Query: 474 ATVLRRTDAGQRLSVVSLLNAE 539
              LR  +  QRL    +LN E
Sbjct: 148 DQKLREKEEAQRLRQEQILNKE 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,638,658
Number of Sequences: 5004
Number of extensions: 54813
Number of successful extensions: 169
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)