Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060286.seq
(677 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0250 + 23609594-23610784 32 0.37
09_02_0433 + 9346464-9347304,9347848-9348470,9348578-9349282 31 0.85
05_05_0256 - 23647736-23648947 31 0.85
05_05_0255 + 23643568-23644761 31 0.85
05_03_0213 + 10303870-10303999,10304181-10304367,10305352-103054... 30 2.0
06_03_1399 + 29892993-29893154,29894819-29895132,29895227-298953... 29 2.6
05_07_0078 - 27536211-27536282,27536396-27536470,27537411-275375... 29 3.4
04_04_1154 - 31297628-31298020,31298150-31298300,31298389-312986... 29 3.4
10_03_0010 + 7007694-7007888,7007994-7008059,7008161-7008334,700... 29 4.5
10_02_0078 - 4992019-4992594,4993156-4993248,4995984-4996202,499... 29 4.5
05_03_0188 + 9417186-9417306,9417418-9417604,9417669-9417801,941... 29 4.5
09_03_0218 + 13539481-13540082,13540171-13540276,13540645-135409... 28 6.0
05_05_0262 - 23666184-23666262,23666564-23667759 28 6.0
05_03_0190 + 9485701-9485806,9487182-9487368,9489662-9489733,949... 28 6.0
04_04_0712 + 27476319-27476569,27477150-27477402,27477535-274779... 28 6.0
10_01_0143 - 1696176-1696736 28 7.9
07_01_0052 - 411927-412589 28 7.9
06_03_1037 - 27058002-27058082,27058856-27059041,27060033-270601... 28 7.9
>05_05_0250 + 23609594-23610784
Length = 396
Score = 32.3 bits (70), Expect = 0.37
Identities = 20/37 (54%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 174 SWRRAVARQAQPVPRPYPSI-VPSAGTGDGQALRCLV 281
SWR AVA A P RP P I VPSAG G C V
Sbjct: 35 SWRAAVAAPAPPQQRPVPWILVPSAG---GPTFSCAV 68
>09_02_0433 + 9346464-9347304,9347848-9348470,9348578-9349282
Length = 722
Score = 31.1 bits (67), Expect = 0.85
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +3
Query: 402 IKEVLQSRHEKR-SCSKRKGQDQLQATVLRRTDAGQRLSVVS 524
I E L S+ K+ S S +KGQ+ L A VLR T+ R S V+
Sbjct: 249 IVETLYSKSNKKLSYSGQKGQNALHAAVLRGTEESTRFSDVT 290
>05_05_0256 - 23647736-23648947
Length = 403
Score = 31.1 bits (67), Expect = 0.85
Identities = 19/37 (51%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 174 SWRRAVARQAQPVPRPYPSI-VPSAGTGDGQALRCLV 281
SWR AVA A P RP P I VPS+G G C V
Sbjct: 35 SWRAAVAAPAPPQQRPLPWILVPSSG---GPTFSCAV 68
>05_05_0255 + 23643568-23644761
Length = 397
Score = 31.1 bits (67), Expect = 0.85
Identities = 21/40 (52%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Frame = +3
Query: 168 IC-SWRRAVARQAQPVP--RPYPSI-VPSAGTGDGQALRC 275
+C WR AVA Q QP P RP PSI VP A DG C
Sbjct: 32 VCHDWRVAVAPQPQPPPGTRPLPSILVPRA--DDGHCFAC 69
>05_03_0213 +
10303870-10303999,10304181-10304367,10305352-10305423,
10305722-10305793,10306059-10306130,10306435-10306518,
10306765-10306839,10307098-10307206
Length = 266
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 135 IRRLRNIVTIVICSWRRAVARQAQPVPRPYP 227
+R L +V +++CSW R A QAQ P+ P
Sbjct: 12 VRHLAWLV-LILCSWPRVAAAQAQQAPKTDP 41
>06_03_1399 +
29892993-29893154,29894819-29895132,29895227-29895319,
29895424-29895514,29895791-29895884,29896161-29896255,
29896432-29896501,29896612-29896691,29897145-29897261,
29897566-29897642,29897907-29898432
Length = 572
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = -1
Query: 194 RYCSSPAAYHYCNNVAQATNIVARGLSIPVIRRLRLGSG 78
R S A HY N + Q NIV+R LS+P R L G
Sbjct: 313 RLGSCGLALHYANIINQIENIVSRPLSLPPSARDNLYHG 351
>05_07_0078 -
27536211-27536282,27536396-27536470,27537411-27537512,
27538153-27538233,27538322-27538744
Length = 250
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 327 VLPHAPSEESFASVTGRGTVVLARPLSPQMAQ 232
+L H P S AS+ R LA+PL PQ ++
Sbjct: 15 LLAHTPQPASLASIATRTLASLAKPLVPQASR 46
>04_04_1154 -
31297628-31298020,31298150-31298300,31298389-31298620,
31298700-31298910,31299137-31299255,31299341-31299415,
31299991-31300189,31300258-31300664,31300775-31300839,
31300967-31301011,31301449-31301520,31301597-31301671,
31301912-31301983,31302178-31302249,31302525-31302596,
31302880-31302951,31303056-31303127,31304064-31304135,
31304375-31304561,31304686-31304815
Length = 930
Score = 29.1 bits (62), Expect = 3.4
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 153 IVTIVICSWRRAVARQAQPVPRPYPS 230
++ +++CSWR A A+ QP P P+
Sbjct: 17 VLVLLLCSWRAADAQAQQPPPHTDPT 42
>10_03_0010 +
7007694-7007888,7007994-7008059,7008161-7008334,
7009232-7009306,7009384-7009510,7012280-7012371,
7012496-7012566,7012683-7012792,7013016-7013053,
7013825-7013960,7014382-7014456,7014574-7014697,
7014917-7015013,7015426-7015451,7016180-7016255,
7016499-7016636,7016735-7016872
Length = 585
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -2
Query: 301 ILCIRHRTRHRSACPSPVPADGTMLGYGRGTGCA 200
ILC R RHR AC P P ++ Y R CA
Sbjct: 39 ILCCRLSRRHRLAC-LPQPPSDVLVVYQRCQSCA 71
>10_02_0078 -
4992019-4992594,4993156-4993248,4995984-4996202,
4996282-4996345,4996429-4996485,4996573-4996671,
4997296-4997327
Length = 379
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +3
Query: 330 FVYMPFQQELCSRQRQKEPMQIL*IKEVLQSRHEKRSCSKRKGQD--QLQATVLRR 491
F+ +P+QQ +Q+Q +P Q K+ L + +K+S +++ Q + T LRR
Sbjct: 183 FITLPYQQSYPQKQQQAQPQQ---PKQSLPQQQQKQSLPQQQQQQMPHEKPTTLRR 235
>05_03_0188 +
9417186-9417306,9417418-9417604,9417669-9417801,
9418673-9418752,9421940-9422011,9422211-9422282,
9422361-9422432,9422720-9422791,9423038-9423109,
9423335-9423406,9423497-9423568,9423648-9423722,
9423824-9423895,9424072-9424137,9424223-9424299,
9424642-9425021,9425112-9425310,9425380-9425538,
9425620-9425738,9425942-9426092,9426257-9426488,
9426573-9426723,9426808-9427125
Length = 1007
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 153 IVTIVICSWRRAVARQAQPVPRP 221
++ +V+CSWR A QAQP P
Sbjct: 16 LLVLVLCSWRIIAAAQAQPRTDP 38
>09_03_0218 + 13539481-13540082,13540171-13540276,13540645-13540960,
13541187-13541263,13541269-13541895,13542783-13543112,
13543442-13543747,13543824-13543896,13544004-13544089,
13544219-13544396,13545311-13545756
Length = 1048
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = -3
Query: 402 STISALVPFVFVDYTVPAETACIQMVLPHAPSEESFASVTGRGTVVLARPLSPQM 238
+T++ L P V PA T + + PS+ ++V G V LA+P P++
Sbjct: 994 TTLATLAPAVAPTTLAPA-TTMLPLPRSRLPSQAPLSTVLGIPVVALAKPPPPEL 1047
>05_05_0262 - 23666184-23666262,23666564-23667759
Length = 424
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = +3
Query: 168 IC-SWRRAVARQAQPVP--RPYPSIV 236
+C +WR AVA Q QP P RP PSI+
Sbjct: 32 VCHNWRVAVAPQPQPPPGTRPLPSIL 57
>05_03_0190 +
9485701-9485806,9487182-9487368,9489662-9489733,
9490089-9490160,9490514-9490585,9490845-9490916,
9491355-9491426,9491503-9491577,9492008-9492073,
9492144-9492188,9492276-9492340,9492429-9492811,
9492878-9493076,9493150-9493308,9493386-9493504,
9493652-9493862,9493993-9494224,9494307-9494457,
9494550-9494870
Length = 892
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 162 IVICSWRRAVARQAQPVPRPYPSIVPSAGT 251
+++CSWR A A QAQ PR P+ + T
Sbjct: 13 VLVCSWRIAAA-QAQAAPRTDPTEAAALNT 41
>04_04_0712 +
27476319-27476569,27477150-27477402,27477535-27477914,
27479738-27479864,27479945-27480110,27480221-27480359,
27481854-27481987,27482087-27482229,27482367-27482565,
27482688-27483010
Length = 704
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 11/61 (18%)
Frame = +1
Query: 244 RGQGTGKHYGASSCDGCKGFFRRSVRKN-------HLYT----CRFSRNCVVDKDKRNQC 390
+G+GT K ++C GC G R++ + H+ T CR S + D+DK C
Sbjct: 438 KGKGT-KSEAPATCYGCHGVGMRNIMRQIGLGMIQHMQTVCPECRGSGEIISDRDKCTNC 496
Query: 391 R 393
R
Sbjct: 497 R 497
>10_01_0143 - 1696176-1696736
Length = 186
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = -2
Query: 283 RTRHRSACPSPVPADGTMLGYGRGTGCACLATARLQLHITIVTMLRRRR 137
R+R R P P P G+ G RG G +L +T+ TM R+R
Sbjct: 24 RSRRRWIPPPPSPEGGSGAGRARGNG---FGGNDAELVVTVATMAGRQR 69
>07_01_0052 - 411927-412589
Length = 220
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 378 FVFVDYTVPAETACIQMVLPHAPSEESFASVTGR 277
+VF D VPA C+ +VL P S ++ GR
Sbjct: 114 YVFSDMNVPALLFCMNVVLTAGPYAGSTVTILGR 147
>06_03_1037 -
27058002-27058082,27058856-27059041,27060033-27060176,
27060284-27061183
Length = 436
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 186 AVARQAQPVPRPYPSIVPSAGTGDG 260
A A ++P P P P +PSAG G G
Sbjct: 124 AEASSSEPPPPPPPRTLPSAGAGRG 148
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,912,069
Number of Sequences: 37544
Number of extensions: 403843
Number of successful extensions: 1447
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1443
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -