Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060286.seq
(677 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4250| Best HMM Match : zf-C4 (HMM E-Value=2.3e-39) 135 4e-32
SB_14472| Best HMM Match : No HMM Matches (HMM E-Value=.) 109 3e-24
SB_58028| Best HMM Match : zf-C4 (HMM E-Value=0) 103 2e-22
SB_58064| Best HMM Match : No HMM Matches (HMM E-Value=.) 103 2e-22
SB_20447| Best HMM Match : zf-C4 (HMM E-Value=2.09999e-41) 101 7e-22
SB_56305| Best HMM Match : zf-C4 (HMM E-Value=0) 98 5e-21
SB_58027| Best HMM Match : zf-C4 (HMM E-Value=0) 96 2e-20
SB_30131| Best HMM Match : zf-C4 (HMM E-Value=8.39938e-42) 95 5e-20
SB_9970| Best HMM Match : zf-C4 (HMM E-Value=9.4e-38) 92 3e-19
SB_18088| Best HMM Match : zf-C4 (HMM E-Value=7.56701e-44) 88 5e-18
SB_12110| Best HMM Match : No HMM Matches (HMM E-Value=.) 88 5e-18
SB_32228| Best HMM Match : zf-C4 (HMM E-Value=6.2e-23) 86 2e-17
SB_10105| Best HMM Match : zf-C4 (HMM E-Value=3.60001e-40) 81 1e-15
SB_51757| Best HMM Match : Hormone_recep (HMM E-Value=6.4e-37) 78 6e-15
SB_36879| Best HMM Match : Hormone_recep (HMM E-Value=0) 74 9e-14
SB_12318| Best HMM Match : No HMM Matches (HMM E-Value=.) 71 7e-13
SB_33135| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 4e-06
SB_5770| Best HMM Match : Hormone_recep (HMM E-Value=3.4e-22) 46 3e-05
SB_2435| Best HMM Match : WD40 (HMM E-Value=4.1e-10) 34 0.12
SB_14682| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.86
SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_2908| Best HMM Match : HMG_box (HMM E-Value=1.5e-08) 30 1.5
SB_26086| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_19262| Best HMM Match : Laminin_EGF (HMM E-Value=0.36) 29 2.6
SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_24062| Best HMM Match : Drf_FH1 (HMM E-Value=0.45) 28 6.0
SB_45176| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_45175| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11) 28 8.0
SB_28694| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28) 28 8.0
>SB_4250| Best HMM Match : zf-C4 (HMM E-Value=2.3e-39)
Length = 79
Score = 135 bits (326), Expect = 4e-32
Identities = 54/63 (85%), Positives = 61/63 (96%)
Frame = +1
Query: 250 QGTGKHYGASSCDGCKGFFRRSVRKNHLYTCRFSRNCVVDKDKRNQCRYCRLRKCFKAGM 429
+ TGKHYGASSCDGCKGFFRRSVRKNH+Y+CRF RNCV++KDKRNQCR+CRLRKCF+AGM
Sbjct: 16 RATGKHYGASSCDGCKGFFRRSVRKNHVYSCRFQRNCVINKDKRNQCRFCRLRKCFRAGM 75
Query: 430 KKE 438
KKE
Sbjct: 76 KKE 78
>SB_14472| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 109 bits (261), Expect = 3e-24
Identities = 48/84 (57%), Positives = 63/84 (75%)
Frame = +1
Query: 250 QGTGKHYGASSCDGCKGFFRRSVRKNHLYTCRFSRNCVVDKDKRNQCRYCRLRKCFKAGM 429
+ +GKHYG +C+GCK FF+RSVR+N YTCR SR+C +D+ RNQC+YCRL+KC K GM
Sbjct: 249 KSSGKHYGVFTCEGCKSFFKRSVRRNLTYTCRASRDCPIDQHHRNQCQYCRLKKCLKVGM 308
Query: 430 KKEAVQNERDRINCRRPSYEEPTQ 501
++EAVQ R RI P+ + PTQ
Sbjct: 309 RREAVQ--RGRI----PAAQTPTQ 326
>SB_58028| Best HMM Match : zf-C4 (HMM E-Value=0)
Length = 438
Score = 103 bits (246), Expect = 2e-22
Identities = 41/69 (59%), Positives = 53/69 (76%)
Frame = +1
Query: 250 QGTGKHYGASSCDGCKGFFRRSVRKNHLYTCRFSRNCVVDKDKRNQCRYCRLRKCFKAGM 429
+ +GKHYG +C+GCK FF+RS+R++ Y+CR RNC VD RNQC+YCRL+KC K GM
Sbjct: 85 KSSGKHYGVYTCEGCKSFFKRSIRRSLSYSCRGVRNCPVDIQNRNQCQYCRLKKCLKVGM 144
Query: 430 KKEAVQNER 456
+KEAVQ R
Sbjct: 145 RKEAVQKGR 153
>SB_58064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1027
Score = 103 bits (246), Expect = 2e-22
Identities = 50/114 (43%), Positives = 71/114 (62%), Gaps = 1/114 (0%)
Frame = +1
Query: 223 IPALCHLRGQGTGKHYGASSCDGCKGFFRRSVRKNHLYTCRFSRNCVVDKDKRNQCRYCR 402
IP + +G+HYG +C+GCKGFF+RSVR+N +Y C F C+VDK RN+C+ CR
Sbjct: 734 IPICLVCNDRASGRHYGVMTCEGCKGFFKRSVRRNMVYHCMFRETCIVDKVLRNRCQKCR 793
Query: 403 LRKCFKAGMKKEAVQNERDRINCRRPSYEEPTQANVYLLYRSSTLNS*V-EKSL 561
+ KC GM+K AVQ ER ++C + + ++ SSTLNS V +KS+
Sbjct: 794 MDKCLAVGMQKSAVQYERRPLSCSTRTSTLSSSSS-----HSSTLNSPVMDKSI 842
>SB_20447| Best HMM Match : zf-C4 (HMM E-Value=2.09999e-41)
Length = 419
Score = 101 bits (241), Expect = 7e-22
Identities = 43/76 (56%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
Frame = +1
Query: 235 CHLRGQ-GTGKHYGASSCDGCKGFFRRSVRKNHLYTCRFSRNCVVDKDKRNQCRYCRLRK 411
C + G GTGKHYG +C+GCKGFF+R+VRKN +YTCR S +C +DK RN+C+ CR K
Sbjct: 42 CKVCGDNGTGKHYGVVACEGCKGFFKRTVRKNLIYTCRGSNDCFIDKVHRNRCQKCRFVK 101
Query: 412 CFKAGMKKEAVQNERD 459
C AGMKKE + D
Sbjct: 102 CLTAGMKKEEGLQQND 117
>SB_56305| Best HMM Match : zf-C4 (HMM E-Value=0)
Length = 553
Score = 98.3 bits (234), Expect = 5e-21
Identities = 42/81 (51%), Positives = 60/81 (74%), Gaps = 1/81 (1%)
Frame = +1
Query: 217 DHIPALCHLRGQGTGKHYGASSCDGCKGFFRRSVRKNHLYTCR-FSRNCVVDKDKRNQCR 393
+ I A+C + TG+HYG +SC+GCKGFF+RSV+ YTCR +++C +DK RN+C+
Sbjct: 195 NEICAIC--LDKATGQHYGVTSCEGCKGFFKRSVQNKKDYTCRNLTKDCPIDKRHRNRCQ 252
Query: 394 YCRLRKCFKAGMKKEAVQNER 456
YCR +KC +AGM KEAV+ +R
Sbjct: 253 YCRFQKCIQAGMIKEAVREDR 273
>SB_58027| Best HMM Match : zf-C4 (HMM E-Value=0)
Length = 396
Score = 96.3 bits (229), Expect = 2e-20
Identities = 37/69 (53%), Positives = 49/69 (71%)
Frame = +1
Query: 250 QGTGKHYGASSCDGCKGFFRRSVRKNHLYTCRFSRNCVVDKDKRNQCRYCRLRKCFKAGM 429
+ TGKHYG S+C+GCK FF+R+VR N YTCR C +D++ R++C CR +KC GM
Sbjct: 63 KSTGKHYGVSTCEGCKSFFKRTVRNNTNYTCRGQNTCAIDRNSRSRCPSCRFQKCLSTGM 122
Query: 430 KKEAVQNER 456
KKEAVQ +
Sbjct: 123 KKEAVQTTK 131
>SB_30131| Best HMM Match : zf-C4 (HMM E-Value=8.39938e-42)
Length = 311
Score = 95.1 bits (226), Expect = 5e-20
Identities = 42/90 (46%), Positives = 59/90 (65%), Gaps = 3/90 (3%)
Frame = +1
Query: 232 LCHLRGQ-GTGKHYGASSCDGCKGFFRRSVRKNHLYTCRFSRNCVVDKDKRNQCRYCRLR 408
LC + G +G+HYG +CDGC GFF RSVR++ +YTC+ + C VDK +RNQC+ CR +
Sbjct: 34 LCKVCGDISSGRHYGVYTCDGCSGFFMRSVRRDMVYTCKGNGGCTVDKKRRNQCQACRFK 93
Query: 409 KCFKAGMKKEAVQNERDRINCR--RPSYEE 492
KC + M + AVQ ER + R +P +E
Sbjct: 94 KCLEVKMNRFAVQQERQPNSTRVMKPHLDE 123
>SB_9970| Best HMM Match : zf-C4 (HMM E-Value=9.4e-38)
Length = 259
Score = 92.3 bits (219), Expect = 3e-19
Identities = 40/72 (55%), Positives = 50/72 (69%), Gaps = 4/72 (5%)
Frame = +1
Query: 235 CHLRG-QGTGKHYGASSCDGCKGFFRRSVRKNHLYTCRFSR---NCVVDKDKRNQCRYCR 402
C + G + +GKHYG +CDGC GFF+RS+R+N YTCR + NC VDK RNQCR CR
Sbjct: 8 CKVCGDRSSGKHYGIYACDGCSGFFKRSIRRNRSYTCRATNGKGNCPVDKIHRNQCRSCR 67
Query: 403 LRKCFKAGMKKE 438
L+KCF M K+
Sbjct: 68 LKKCFDVSMNKD 79
>SB_18088| Best HMM Match : zf-C4 (HMM E-Value=7.56701e-44)
Length = 1220
Score = 88.2 bits (209), Expect = 5e-18
Identities = 34/73 (46%), Positives = 51/73 (69%)
Frame = +1
Query: 226 PALCHLRGQGTGKHYGASSCDGCKGFFRRSVRKNHLYTCRFSRNCVVDKDKRNQCRYCRL 405
PA + TG HYG +C+GCKGFF+R+V+K YTCR +++C +++ RN+C+YCR
Sbjct: 821 PACVVCNDKATGYHYGVFTCEGCKGFFKRTVQKQLEYTCRGNQDCDINQHTRNRCQYCRF 880
Query: 406 RKCFKAGMKKEAV 444
KC K+GM K+ +
Sbjct: 881 EKCVKSGMLKQGM 893
>SB_12110| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 360
Score = 88.2 bits (209), Expect = 5e-18
Identities = 36/76 (47%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Frame = +1
Query: 232 LCHLRG-QGTGKHYGASSCDGCKGFFRRSVRKNHLYTCRFSRNCVVDKDKRNQCRYCRLR 408
+C + G + +G HYG SC+GCK FF+R+V+K Y C S++C +DK+ R +C+YCR +
Sbjct: 13 VCAICGDRSSGFHYGVQSCEGCKSFFKRTVQKQLQYACVESKSCQIDKNNRIRCQYCRFQ 72
Query: 409 KCFKAGMKKEAVQNER 456
KC GM KEAV+ +R
Sbjct: 73 KCLALGMLKEAVREDR 88
>SB_32228| Best HMM Match : zf-C4 (HMM E-Value=6.2e-23)
Length = 300
Score = 86.2 bits (204), Expect = 2e-17
Identities = 33/59 (55%), Positives = 46/59 (77%)
Frame = +1
Query: 280 SCDGCKGFFRRSVRKNHLYTCRFSRNCVVDKDKRNQCRYCRLRKCFKAGMKKEAVQNER 456
+CDGC+GFF+RSVR+N Y C+ +C +D +RNQC+ CRLRKCF+ M ++AVQ+ER
Sbjct: 2 TCDGCRGFFKRSVRRNLAYQCKEKNDCPIDVARRNQCQACRLRKCFEMNMNRDAVQHER 60
>SB_10105| Best HMM Match : zf-C4 (HMM E-Value=3.60001e-40)
Length = 370
Score = 80.6 bits (190), Expect = 1e-15
Identities = 32/67 (47%), Positives = 44/67 (65%)
Frame = +1
Query: 256 TGKHYGASSCDGCKGFFRRSVRKNHLYTCRFSRNCVVDKDKRNQCRYCRLRKCFKAGMKK 435
+G+HYG +C+GCK FF R+VR Y C S +C VDK R QC+ CR +KC GM++
Sbjct: 30 SGRHYGVFTCEGCKCFFNRTVRYKLTYICEGSGSCRVDKQNRTQCQACRFKKCATVGMRR 89
Query: 436 EAVQNER 456
EA++ R
Sbjct: 90 EAIRRGR 96
>SB_51757| Best HMM Match : Hormone_recep (HMM E-Value=6.4e-37)
Length = 405
Score = 78.2 bits (184), Expect = 6e-15
Identities = 34/78 (43%), Positives = 47/78 (60%)
Frame = +1
Query: 199 KRSQFHDHIPALCHLRGQGTGKHYGASSCDGCKGFFRRSVRKNHLYTCRFSRNCVVDKDK 378
KR Q D + +C Q TGKHYG +CDGC GFF+R+ R+ + C+ C V
Sbjct: 16 KRIQ-DDQVCVVCG--DQSTGKHYGVFACDGCSGFFKRTSRRLEPWVCKAQNACSVKTTS 72
Query: 379 RNQCRYCRLRKCFKAGMK 432
RN+C+ CR++KC + GMK
Sbjct: 73 RNECKACRMKKCVEVGMK 90
>SB_36879| Best HMM Match : Hormone_recep (HMM E-Value=0)
Length = 358
Score = 74.1 bits (174), Expect = 9e-14
Identities = 33/75 (44%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Frame = +1
Query: 250 QGTGKHYGASSCDGCKGFFRRSVRKNHL--YTC-RFSRN-CVVDKDKRNQCRYCRLRKCF 417
+ +G HYGA +C+GCK FF+R+V++ + Y+C R ++N C +DK+ R +C+ CRL++CF
Sbjct: 13 ESSGYHYGAYTCEGCKSFFKRTVQRGLVKKYSCVRSNQNQCPMDKNSRAKCQACRLQRCF 72
Query: 418 KAGMKKEAVQNERDR 462
AGM V+ E+ R
Sbjct: 73 DAGMVLNGVRKEKKR 87
>SB_12318| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 420
Score = 71.3 bits (167), Expect = 7e-13
Identities = 29/54 (53%), Positives = 39/54 (72%), Gaps = 1/54 (1%)
Frame = +1
Query: 232 LCHLRG-QGTGKHYGASSCDGCKGFFRRSVRKNHLYTCRFSRNCVVDKDKRNQC 390
LC + G + +GKHYG +CDGC+GFF+RS+R+N Y C+ CVVD +RNQC
Sbjct: 22 LCRVCGDRSSGKHYGVFTCDGCRGFFKRSIRRNLTYHCKELGKCVVDVARRNQC 75
>SB_33135| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 48.8 bits (111), Expect = 4e-06
Identities = 19/33 (57%), Positives = 24/33 (72%)
Frame = +1
Query: 358 CVVDKDKRNQCRYCRLRKCFKAGMKKEAVQNER 456
C V+K RN C++CR+RKC GMK+EAVQ R
Sbjct: 66 CPVNKRYRNSCQFCRMRKCLAVGMKREAVQQAR 98
>SB_5770| Best HMM Match : Hormone_recep (HMM E-Value=3.4e-22)
Length = 282
Score = 46.0 bits (104), Expect = 3e-05
Identities = 25/56 (44%), Positives = 36/56 (64%)
Frame = +3
Query: 510 LSVVSLLNAELLSRKVIDETVNVSDAEINNRKLAKINDVCDSIKQQLLILVEWAKY 677
L+ SLL+AE+LSR ++ K A +D+C+S++QQLLILVEWAK+
Sbjct: 21 LTTQSLLSAEILSRPASSPPESIC-----LEKEANYSDICESMRQQLLILVEWAKH 71
>SB_2435| Best HMM Match : WD40 (HMM E-Value=4.1e-10)
Length = 1272
Score = 33.9 bits (74), Expect = 0.12
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Frame = +3
Query: 369 QRQKEPMQIL*IKEVLQSRHEKRS-CSKRKGQDQLQATVLRR-TDAGQRLSVVS--LLNA 536
Q QKE +Q ++E LQS + RS S ++ Q +L+ + RR T+A Q + + S +L+
Sbjct: 775 QAQKEMLQQELLREELQSSFKHRSQISHQRQQQELEDQLFRRATNASQEVDLDSQRILHE 834
Query: 537 ELLSRKVIDETVNVSDAEINNRKLAKINDVCDSIK 641
+L + V++ + E +L + D +K
Sbjct: 835 DLAKAQSKKAEVDIEEEEGMRSRLESLQREMDQVK 869
>SB_14682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 802
Score = 31.1 bits (67), Expect = 0.86
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = -2
Query: 640 FIESHTSLIFASFLLFISASLTFTVSSMTFLLRSSALRSDTTD--RRWPAS 494
++E H ++ + + F SS +F LR S LRS+ TD + WP+S
Sbjct: 67 YLEGHNETVYRRRGKPVKLTTMFCKSSQSFDLRFSFLRSNDTDICKAWPSS 117
>SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2672
Score = 30.3 bits (65), Expect = 1.5
Identities = 28/103 (27%), Positives = 56/103 (54%), Gaps = 4/103 (3%)
Frame = +3
Query: 294 QRILQTE-REEEPFVY--MPFQQELCSRQRQKEPMQIL*IKEVLQSRHEKRSCSKRKGQD 464
+ IL +E R +E ++ + ++Q+ C R+ ++ ++ LQS HE + + +GQ
Sbjct: 844 KNILMSEARRKEHALHSSLEYEQQRC-REMGEQVDRLREDLNKLQSAHESLTNNASQGQL 902
Query: 465 QLQATVLRRTDAGQRLSVVSLLNAELLSRKVID-ETVNVSDAE 590
+LQA + T+AGQ+ + ELL K ++ + + +S+ E
Sbjct: 903 ELQAQL---TEAGQKHKLACARIEELLEEKRLNYDAMQLSERE 942
>SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1169
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = -1
Query: 299 PLHPSQDEAP*CLPVPCPRRWHNAGIWSWNWLRLPR--YCSSPAA 171
PL S P PVPCP ++ G S N P CS PAA
Sbjct: 89 PLVTSHQMVPRVPPVPCPTGMYSLGAASMNCTACPAGFSCSDPAA 133
>SB_2908| Best HMM Match : HMG_box (HMM E-Value=1.5e-08)
Length = 324
Score = 30.3 bits (65), Expect = 1.5
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 2/118 (1%)
Frame = +3
Query: 291 MQRILQTEREEEPFVYMPFQQELCSRQRQKEPMQIL*IKEVLQSRHEKRSCSKRKGQDQL 470
M +L++ER + EL S + E + ++ LQ EK K++ D+
Sbjct: 184 MTEVLKSERVSHKLMTEVLMSELLSHKLMTEVLSEKKLEGELQQIEEKFKSKKQRFLDES 243
Query: 471 QA--TVLRRTDAGQRLSVVSLLNAELLSRKVIDETVNVSDAEINNRKLAKINDVCDSI 638
+ LR+T R+S SL + L ID ++VSD +N L ++D C +I
Sbjct: 244 EKFDESLRKT----RVSTFSLSDTCLN----IDPLLHVSDTCLNIDPLLHVSDTCLNI 293
>SB_26086| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1511
Score = 30.3 bits (65), Expect = 1.5
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Frame = +1
Query: 283 CDGCKGFFRRSVRKNHLYTCR--FSRNCVVDK---DKRNQ--CRYCR-LRKCFKAGMKKE 438
C C F + R++H C + C +K + R+ CR CR R+ G+KK
Sbjct: 1303 CMLCDALFTLTRRRHHCRACGGIYCNACSHNKAPLEYRDGKLCRVCRSCREILVHGVKKT 1362
Query: 439 AVQNERDRINCRRPSYEEPTQANVYLLYRSS 531
++ + I+ RR + ++ + +L YR S
Sbjct: 1363 PIEQKTASIDTRRLAVKDKVLLSGFLEYRGS 1393
>SB_19262| Best HMM Match : Laminin_EGF (HMM E-Value=0.36)
Length = 1173
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 177 WRRAVARQAQPVPRPYPSIVPSAGTGDGQAL 269
WRR+ QA P PRP P + +A T Q L
Sbjct: 1032 WRRSRVGQASPCPRPRPRLGQAALTPRAQPL 1062
>SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 650
Score = 28.7 bits (61), Expect = 4.6
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = -2
Query: 664 STNMSS-CCFIESHTSLIFASFLLFISASLTFTVSSMTFLLRSSA-LRSDTT 515
ST +SS F+ S T+L+ +S F+S+ TF+ S TF+ + L SDTT
Sbjct: 288 STFLSSDTTFLSSDTTLL-SSDSTFLSSDTTFSSSDSTFVSSDTTFLSSDTT 338
>SB_24062| Best HMM Match : Drf_FH1 (HMM E-Value=0.45)
Length = 1032
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +1
Query: 241 LRGQGTGKHYGASSCDGCKGFFRRSVRKNHLYTCRFSRNCVVDKDKRNQCR 393
+R QGTG S C C GF++ + H C F + K + Q R
Sbjct: 562 VRRQGTGGADCYSPCPSCNGFYKSNELYRH--KCAFKSDNTKTKSMKMQSR 610
>SB_45176| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +1
Query: 349 SRNCVVDKDKRNQCRYCRLR-KCFKAGMKKEAVQNERDRI 465
S+ C DKD+ R C L+ +C + M+ EA + + R+
Sbjct: 75 SKRCEADKDEELSKRICWLKQRCNEVDMRWEAAKRKAQRL 114
>SB_45175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +1
Query: 349 SRNCVVDKDKRNQCRYCRLR-KCFKAGMKKEAVQNERDRI 465
S+ C DKD+ R C L+ +C + M+ EA + + R+
Sbjct: 130 SKRCEADKDEELSKRICWLKQRCNEVDMRWEAAKRKAQRL 169
>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
Length = 1903
Score = 27.9 bits (59), Expect = 8.0
Identities = 23/80 (28%), Positives = 35/80 (43%)
Frame = +3
Query: 435 RSCSKRKGQDQLQATVLRRTDAGQRLSVVSLLNAELLSRKVIDETVNVSDAEINNRKLAK 614
RS KRK + + + L D G+ + L N L+ VI ++V D +IN +
Sbjct: 1187 RSAGKRKYKARFNISNLAINDTGKFYCTLELNNMNTLTEYVI---LSVVDLQINKESSSS 1243
Query: 615 INDVCDSIKQQLLILVEWAK 674
+ D K +LL V K
Sbjct: 1244 YVESWDGHKVKLLCSVRVPK 1263
>SB_28694| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28)
Length = 1045
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 501 GQRLSVVSLLNAELLSRKVIDETVNVSDAEINNRKLAKIND 623
GQ+L V L EL+ + TV+ E++NR L ++D
Sbjct: 915 GQQLVVPRALRKELMEKTHSSHTVSADLCELDNRTLLVVSD 955
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,472,444
Number of Sequences: 59808
Number of extensions: 458263
Number of successful extensions: 1394
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1387
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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